Query= MSMg01no540_k17.b1 MSMg01no540_k17.b1 CHROMAT_FILE:
MSMg01no540_k17.b1 PHD_FILE: MSMg01no540_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:01 2005
(515 letters)
>mm_chr11_44008643_44009558
Length = 916
Score = 951 bits (492), Expect = 0.0
Identities = 504/508 (99%), Gaps = 1/508 (0%)
Strand = Plus / Minus
Query: 1 tatgtaggtacctaatgaaacctgatggtttgtgtgctaatctaagaaatttaaaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatgtaggtacctaatgaaacctgatggtttgtgtgctaatctaagaaatttaaaaagag 449
Query: 61 gaaaagaatccacagtagatgcattaaagttcaatgtgtccacagtttgttgcatgtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaaagaatccacagtagatgcattaaagttcaatgtgtccacagtttgttgcatgtgca 389
Query: 121 aagaaattattgaaaaaaaatattgtgtgaaggaatggagacaggagatgcaaga-ttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 388 aagaaattattgaaaaaaaatattgtgtgaaggaatggagacaggagatgcaagatttca 329
Query: 180 tggtcatctttggccacacagcttgaggtcattcttggctgtgtgagactctgtcaaagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tggtcatctttggccacacagcttgaggtcattcttggctgtgtgagactctgtcaaagt 269
Query: 240 atgtacaatttaaagttactttctggctatataattgtgcttatacatacatttttaaaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 268 atgtacaatttaaagttactttctggctatataattgtgcttatacatacgtttttaaaa 209
Query: 300 tttagacttgccttactttattttctgttgctgtgataaaatactcagacaaaagtaacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 208 tttagacttgccttactttattttctgttgctgtgataaaatactcagacaaaagcaacc 149
Query: 360 caaaaaagaaaaggtttgtctggttcaccagggtacagcccatcatggaacagaagtcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 caaaaaagaaaaggtttgtctggttcaccagggtacagcccatcatggaacagaagtcaa 89
Query: 420 gacaccaggagcttgaagatgctggtcccagtatagagaagaaaacagctatgagtgcat 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 88 gacaccaggagcttgaagatgctggtcccagtatagagaagtaaacagctatgagtgcat 29
Query: 480 gcatgtgggaatttgtatcagtttccca 507
||||||||||||||||||||||||||||
Sbjct: 28 gcatgtgggaatttgtatcagtttccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_k17.g1 MSMg01no540_k17.g1 CHROMAT_FILE:
MSMg01no540_k17.g1 PHD_FILE: MSMg01no540_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:01 2005
(582 letters)
>mm_chr11_43872765_43873746
Length = 982
Score = 1125 bits (582), Expect = 0.0
Identities = 582/582 (100%)
Strand = Plus / Plus
Query: 1 aagggaagccggtatctcattacacagtgggcctgcccagagaaaacaaccccagacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagggaagccggtatctcattacacagtgggcctgcccagagaaaacaaccccagacagg 260
Query: 61 tttttgatttttatgaaccaagcctgagttttgagtagcgctagctccatacctggagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttgatttttatgaaccaagcctgagttttgagtagcgctagctccatacctggagaa 320
Query: 121 taattatttgtaagatgggagatattggagaaacaaatccccctaagtaaacccccttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattatttgtaagatgggagatattggagaaacaaatccccctaagtaaacccccttgg 380
Query: 181 tgggtagagaactgaactctgaaataagatctcagtgcttggggtcacaggggctaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtagagaactgaactctgaaataagatctcagtgcttggggtcacaggggctaagag 440
Query: 241 ctataacacgaaaagcagaaagtgaggcaggttagccatgctagggtttgaagatttgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctataacacgaaaagcagaaagtgaggcaggttagccatgctagggtttgaagatttgcc 500
Query: 301 cagggtcccaacagattttaacactgcctttgctactctcctgtctttctctttttggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggtcccaacagattttaacactgcctttgctactctcctgtctttctctttttggaa 560
Query: 361 ttctctctcaacctaactatttccttccaaataaagaaagtctttcttaaatgaatacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctctctcaacctaactatttccttccaaataaagaaagtctttcttaaatgaatacca 620
Query: 421 cgtttaaaggacttatcatgacttcttgttggtctgagatgaccatcaggacctggagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgtttaaaggacttatcatgacttcttgttggtctgagatgaccatcaggacctggagct 680
Query: 481 ctgacccagtgtttgtgtcctctggaatctgctgccttccaggaacgttgcacattccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgacccagtgtttgtgtcctctggaatctgctgccttccaggaacgttgcacattccct 740
Query: 541 tcccagacagaaagctctgacatccttgctttggcaaaagag 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcccagacagaaagctctgacatccttgctttggcaaaagag 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
