Query= MSMg01no540_p13.b1 MSMg01no540_p13.b1 CHROMAT_FILE:
MSMg01no540_p13.b1 PHD_FILE: MSMg01no540_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
(612 letters)
>mm_chr11_100009922_100010935
Length = 1014
Score = 1085 bits (561), Expect = 0.0
Identities = 601/615 (97%), Gaps = 4/615 (0%)
Strand = Plus / Minus
Query: 1 gtagagttggcaatggtcacctgctgtcaccactgttaccttcattattatttttgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gtagagttggcaatggtcacctgctgtcaccactgttaccttcattattatttttgtcac 755
Query: 61 catgctgtcaaggctcatacatactgttccattcttcgtgggggctcacactcccagatt 120
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 754 tatgctgtcaaggctcatacacactgttccattcttcttgggggctcacactcccagatt 695
Query: 121 ccttctagtgacccccaagtctttccacactttctcagggattaggaaatttcctctacc 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 694 ccttctagtgacccccaagcctttccacactttctcagggattaggaaatttcctctccc 635
Query: 181 tttgaactgttctcctgtgagaactagagatcttctctaagtgg-aaaaccttctggaat 239
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 634 tttgaactgttctcctgtgagaactagagatcttctctaagcggaaaaaccttctggaat 575
Query: 240 gtatccagatggagatggagagtctccacgggagagccagggcttgggaggtgatcttgg 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 574 gtatccagatggagatggagagtctccacgggagagcc-gggcttgggaggtgatcttgg 516
Query: 300 ctctcttcaggaggcacgtgacctcagacaactcgcctcgcttttctgagcccttggatt 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 515 ctctcttcaggaggcacgtgacctcagacaactcgcctcgcttctctgagcccttggatt 456
Query: 360 ggagcagcctttcc--ttcctgggaggctattgttaagattcaccagacaaaggagccca 417
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggagcagcctttcctgttgttgggaggctattgttaagattcaccagacaaaggagccca 396
Query: 418 tggccctgtgtattgggaaaatgtgaattaaacagagttagacaatactactcgcgatta 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 395 tggccctgtgtattgggaaaatgtgaattaaacagagttagacaatactattcgcgatta 336
Query: 478 taattatgacaatcatatactatttaatactaataacattatatgataaaataataataa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taattatgacaatcatatactatttaatactaataacattatatgataaaataataataa 276
Query: 538 caaagcaatttgagtggtaactattagccaggtgctctgattaagccctgcacaagcaca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caaagcaatttgagtggtaactattagccaggtgctctgattaagccctgcacaagcaca 216
Query: 598 tcccattgattcctt 612
|||||||||||||||
Sbjct: 215 tcccattgattcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1014
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1004
Effective search space: 604408
Effective search space used: 604408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p13.g1 MSMg01no540_p13.g1 CHROMAT_FILE:
MSMg01no540_p13.g1 PHD_FILE: MSMg01no540_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
(586 letters)
>mm_chr11_99980548_99981533
Length = 986
Score = 1102 bits (570), Expect = 0.0
Identities = 582/586 (99%)
Strand = Plus / Plus
Query: 1 cttcatctcctgtggagtagggaaggaaaatgtgagagactctcccttcttatctctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcatctcctgtggagtagggaaggaaaatgtgagagactctcccttcttatctctgag 260
Query: 61 tgatagcggaatgttctagaagactcttccgaatccctcagctggtggcaatgtcagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatagcggaatgttctagaagactcttccgaatccctcagctggtggcaatgtcagcct 320
Query: 121 gcaacagagggctctccttgctcatcaaaggcggttcggcccatggccggcctgccatcc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gcaacagagggctctccttgctcatcaaaggcggttcggcccatggccggcctgtcatcc 380
Query: 181 cctctcacctcttcgtggttcttcttcaggtaagccagttcttcattcaggctctcaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcacctcttcgtggttcttcttcaggtaagccagttcttcattcaggctctcaatc 440
Query: 241 tgcatttccaggtcagtcttagccagggtcagctcatccagcaccctgcgcaggccgttg 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatttccaggtcagtcttagccagagtcagctcatccagcaccctgcgcaggccgttg 500
Query: 301 atgtcggcctccacgctctggcgcaaggtcagctcattttcgtacctggaatattttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtcggcctccacgctctggcgcaaggtcagctcattttcgtacctggaatattttttt 560
Query: 361 aattaaagcaaaacaaataatattagatgcatcccatccccatgcactgaattcctctac 420
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 561 aattaaagcaaaacaaataatattagatgcatcccacccccatacactgaattcctctac 620
Query: 421 aactccaaggcccttgctcctggatgctccagtgtctcccaccaagtggccactccttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactccaaggcccttgctcctggatgctccagtgtctcccaccaagtggccactccttta 680
Query: 481 aagtttagagtctaaagcaagagtctttggggaaagactcgtaaggagaatgaactcact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtttagagtctaaagcaagagtctttggggaaagactcgtaaggagaatgaactcact 740
Query: 541 tgagcctgaagtcatctgcagccagcctggcattgtcaatctccag 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagcctgaagtcatctgcagccagcctggcattgtcaatctccag 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
