NNNNCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACTTGATGAATACTGAATGGCTGAGAAATGCCTGAAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCATCTCACACCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTT
CCTCAGAAAATTTTACATAGTACTTCCAGAGGATCCTGCAATACCTCTCC
TGGGCATATATCCAGAAGATATCCCAACCGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAGTACTACTCATGTATAAAAAAGAATGTATTTATGAAATTCCTA
GGCAAATGGATTGACCTGGAGGGCATCATCCTGAGTGAGGTAACCTTATC
ACAAAAGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGTCCA
GAAACTTAGAATACACAATATATAAGATACAATTCGCAAAACACANGGAA
GTCTAGAAGAACGAAGACCAAAGTGTGGACACTTTTGCCCTTCTTAAAAT
TGGNAACAAACACCNATGGA

NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGACCAATGTAATGTGGGG
TAAAAAGAACTGGGAGAAGGTAAGTGCTGGGGTACCTGACACATGGCACA
GTTTTATCAGCTATCTGACTTTGGCAGGCAGGTATCTTTGAGATTGCCAC
ACTCAGACTGAAGAAAGTGAAGGTACAATCATGGCCAGTCTCCTGCTGCA
GAGATCTGCTTTGAAGAAGCACTAGTCATCCTGCCAGACTGCATACATGG
GCGAGTGTGTGTGTGTGTGTATCTATCTCTCTGTCTCTGTTTCTGTCTCT
CTGTGTGTATCTGTCTCTCTGTCTTTCTTTCTCTCTGTCTCTGTCTCTCT
CCCTAGAGTGTGTATGTATCTATCTCTCTGTCTCTCTCTGTCTCTCTCTC
TAGTCTGTGTGTATCTGTCTCTCTGTCTCTCTCTCTAAAGTATATGTTTA
TCTATCTCTCTGTCTCTGTCTCTCCATCTCTCTCTGTCTCTCTGTCTCTC
TCTCTAGAGTGTGTGTTTATCCCTCTGTCTCTGGCTCTCTGTCTGTCTCT
GTCTGTTTGTCTGTCTGTCTGTCTAGTCTCCCCCCCCCTCTGTGTGTGTG
TGTGTGTGTATCAAAGGGGACAGACATGTGTTGGGGGTTGCACATATGTA
CACAGTGGAGGTCAAAGTTCACTGTCACCCTCTTTCACTCTCTGGCTTG

Query= MSMg01no541_j23.g1 MSMg01no541_j23.g1 CHROMAT_FILE:
MSMg01no541_j23.g1 PHD_FILE: MSMg01no541_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:21 2005
         (624 letters)



>mm_chr11_108057437_108058460
          Length = 1024

 Score =  872 bits (451), Expect = 0.0
 Identities = 582/663 (87%), Gaps = 66/663 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgaccaatgtaatgtggggtaaaaagaactgggagaaggtaagtgctggggtacctg 60
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaatgaccaatgtaacgtggggtaaaaagaactgggagaaggtgagtgctggggtacctg 260

                                                                       
Query: 61  acacatggcacagttttatcagctatctgactttggcaggcaggtatctttgagattgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatggcacagttttatcagctatctgactttggcaggcaggtatctttgagattgcc 320

                                                                       
Query: 121 acactcagactgaagaaagtgaaggtacaatcatggccagtctcctgctgcagagatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 acactcagactgaagaaagtgaaggtacaatcatggccagtctcctgctgcagagatttg 380

                                                                       
Query: 181 ctttgaagaagcactagtcatcctgccagactgcatacatgggcgagtgtgtgtgtgtgt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaaagaagcactagtcatcctgccagactgcatacatgggcgagtgtgtgtgtgtgt 440

                                                                       
Query: 241 gtatctatctctctgtctctgtttctgtctctctgtgtgtatctgtctctctgtctttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatctatctctctgtctctgtttctgtctctctgtgtgtatctgtctctctgtctttct 500

                                                                       
Query: 301 ttctctctgtctctgtctctctccctagagtgtgtatgtatctatctctctgtctctctc 360
                     ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ----------ctctgtctctctccctagagtgtgtatgtatctatctctctatctctctc 550

                                                                       
Query: 361 tgtctct--ctctctagtctgtgtgtatctgtctctctgtctctctctctaaagtatatg 418
           | |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 551 tttctctttctctctagtctgtgtgtatctgtctctctgtctctctctctagagtatatg 610

                                                                       
Query: 419 tttatctatctctctgtctctgtctctccatctctctctgtctctctgtctctctctcta 478
           |||||||||||||||||||||      ||||||||||||||||||||          |||
Sbjct: 611 tttatctatctctctgtctct------ccatctctctctgtctctct----------cta 654

                                                                       
Query: 479 gagtgtgtgtttatccctctgtctctggctctctgtctgtct--ctgtctgtttgtct-g 535
           ||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||| |
Sbjct: 655 gagtgtgtgtttatccctctgtctctggctctctgtctgtctgtctgtctgtctgtctag 714

                                                                       
Query: 536 tctgtctgtctagtctccccccc-c---------ctctgtgtgtgt-------------- 571
           ||| ||| |||  |||| | | | |         ||||||||||||              
Sbjct: 715 tctctctctctc-tctctctctctctctctctctctctgtgtgtgtatgtgtgtgtgtgt 773

                                                                       
Query: 572 ----------gtgtgtgtgtatcaaaggggacagacatgtgttgggggttgcacatatgt 621
                     |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 774 gtgtgtgtgtgtgtgtgtgtatcagaggggacagacatgtgttgggggttgcacatatgt 833

              
Query: 622 aca 624
           |||
Sbjct: 834 aca 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)