Query= MSMg01no541_k22.b1 MSMg01no541_k22.b1 CHROMAT_FILE:
MSMg01no541_k22.b1 PHD_FILE: MSMg01no541_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:26 2005
(575 letters)
>mm_chr11_36256436_36257411
Length = 976
Score = 857 bits (443), Expect = 0.0
Identities = 446/447 (99%), Gaps = 1/447 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatg-aaaaaatagattctggaaaattagattctgatatttactttgcatgat 62
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggaattccatgaaaaaaatagattctggaaaattagattctgatatttactttgcatgat 388
Query: 63 gtttgtgttatggcttggatcttgaggaaatggctgaccgtctctaaggtccaacttcct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtttgtgttatggcttggatcttgaggaaatggctgaccgtctctaaggtccaacttcct 328
Query: 123 tatctccagaataactggtaatctgcacaatgtggaacttctggacaaaaataccccttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatctccagaataactggtaatctgcacaatgtggaacttctggacaaaaataccccttt 268
Query: 183 tatgtattgcataatacgtatgacatcatttatacattatataatatatatcacatatat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatgtattgcataatacgtatgacatcatttatacattatataatatatatcacatatat 208
Query: 243 tgtttgtgtggggagtgggtacaagtgtcattttgtgcatggggaagaaaggacagtgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgtttgtgtggggagtgggtacaagtgtcattttgtgcatggggaagaaaggacagtgtg 148
Query: 303 tgtgtgtctgtcctctccttccactgtgacagtcctggtaatggcactggagtcaccatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgtgtgtctgtcctctccttccactgtgacagtcctggtaatggcactggagtcaccatg 88
Query: 363 cctggcagctttgcacactgaaccatcttacagctcctaggaaatttgttgttggtgaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 cctggcagctttgcacactgaaccatcttacagctcctaggaaatttgttgttggtgaaa 28
Query: 423 tacaaccctgagtagagaggcaagttg 449
|||||||||||||||||||||||||||
Sbjct: 27 tacaaccctgagtagagaggcaagttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_k22.g1 MSMg01no541_k22.g1 CHROMAT_FILE:
MSMg01no541_k22.g1 PHD_FILE: MSMg01no541_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:26 2005
(559 letters)
>mm_chr11_36069279_36070237
Length = 959
Score = 1081 bits (559), Expect = 0.0
Identities = 559/559 (100%)
Strand = Plus / Plus
Query: 1 ctaagagtaggttccctttgtattttaaagagggtttcagagtgttgtcagtacaagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagagtaggttccctttgtattttaaagagggtttcagagtgttgtcagtacaagacc 260
Query: 61 acaatcagacacaacatagttatgctgtaattgtctaacctgtctgatgagctaccatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatcagacacaacatagttatgctgtaattgtctaacctgtctgatgagctaccatat 320
Query: 121 ttaaatacaacataaaattcctctctacatttatgcctgagctatggacttgaagggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaatacaacataaaattcctctctacatttatgcctgagctatggacttgaagggaat 380
Query: 181 gtacattaggattaaacctcatgtagacatagcatctaaccccagtgatgtctctgctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacattaggattaaacctcatgtagacatagcatctaaccccagtgatgtctctgctag 440
Query: 241 gaggaaaacatgcaggctgtagggctgagtgtatcagacactgtggtctggcctctcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggaaaacatgcaggctgtagggctgagtgtatcagacactgtggtctggcctctcaag 500
Query: 301 cacggtcaagtacaggaggtatgtgtctgaccttggtcttaactaaggttaaatggctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacggtcaagtacaggaggtatgtgtctgaccttggtcttaactaaggttaaatggctac 560
Query: 361 tgattcaggatgctatgtaccatgaattgtgtggtaccctgcataaatcatggtgccact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattcaggatgctatgtaccatgaattgtgtggtaccctgcataaatcatggtgccact 620
Query: 421 agcaatatggcaccactttgaaaaacctaggcagaaataggatgcctagctttgtggcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaatatggcaccactttgaaaaacctaggcagaaataggatgcctagctttgtggcca 680
Query: 481 aagctagtttcctgatgccttgaagcaatgaggagatttgaagaggtgcaaaaaggatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagctagtttcctgatgccttgaagcaatgaggagatttgaagaggtgcaaaaaggatgg 740
Query: 541 agatagaaagaaagacaga 559
|||||||||||||||||||
Sbjct: 741 agatagaaagaaagacaga 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
