AAAAAACCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTAGAATTAAACCCAAACACTTACCTAGCCATGGATC
ACTTCAGACACTTGGAAAGGTTTTAAAAACATAGACCTCACTTCCCAGAA
AAGTACATCACAAATCTGAGTCTCTCACTGGGCACAGTGAGAATGGGTCT
GTATCTCTGAAATGCTCTACAGACTTGTGAAGTCTGTAGACCGATATAGC
ATGATACTACTACTAAACATTCTCCTTTGGTGAAACACTCCAGCAGTGTC
CTGTTGGTAGATGGTAAAGCCAAGGTCTGGGCAGTAGCACCTCCCACTAA
CCAGAGGGAACCCAAGCTTAACACAAGTACATGTTACTAAACAGCATGAC
GGCACACATTTGTAACCTTGGCACATGCCAAGTTAAGGCACCAGACCGAC
CCAAGTTTGAGGCAAACTGGCCTATACGGTGAGTTACAGGCCAGCCTGGA
CTCCATATTCTGTCTCAAAAGTCAGGAGCAGGAACGATGTTTCAGTGTTG
TGAGCACTTGCTGCTCTTCCCGAGGACTGCAGCTTAATTCCCACTGCCCA
CACCAGGGGCTCAACCATCTGCAACTACTGCTCCAGGAGAAGGAACATCT
ACACACAAGGGAGGCATACACGCATAATACACACTTGTCCACATAATAGA
AATAAAATCTATGTTGGATGTGGAGGCATACAACCTGAATCCCAGTACTC
AGGAGGCAAAAACAG

TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGGTGAGAAGACTGGAGTTTGTGGGTGGGGAA
GCACCCTCATAGAAGCAGTGGGAGGAGGCGATGGGATGCAAGTTTCCAAA
GGGGAGACCTGGAAAGAGGAAAACAATTGAAATGTAAATAAAGAAAATAT
CCAATAAAATAAAATATTTAAATATTTCTTAAATATACATATTTTCTGAA
GCTAAAGATAATATTCACTAAACCAGTTTTTTAAATCTATTTATAACATT
AAACATGATTGAAGTAGAAAATCTCTTATGAAGTCCTCTATAAAAGCAAA
TTCTTAAAAGTTTCTGATTAGACAGAAACCATTCCATCTCCAAGGGAGAA
TACTTAGCATAACTGTGGCTTCCTAGAGTGAATTGGGTAGTGTTCCTTCT
GTTTCTATTTTGTGGAATAGTTTGAAGAGTATTGTATTGATATTAGGTCT
TCTTTGAAGATCTGATAGAACTCTGCACTAAACCCATCTGGTCCTTGGTT
TTTTTGGTTGGGAGACTTTTATGTGGAGGTCCTTGATCTGCTTGGACTTG
AGCTTTGTACAAGAAGATAAGAATGGATCAATTTGCATTCTTCTACATGC
TGATTGCCAGTTGAACCAACACCATTTATTGAAAATGCTGTCTTTTTTTC
CACTGGATGGTTTTAGCTCCTTTGTCAAAGATAAAGTGG

Query= MSMg01no541_n06.b1 MSMg01no541_n06.b1 CHROMAT_FILE:
MSMg01no541_n06.b1 PHD_FILE: MSMg01no541_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:38 2005
         (640 letters)



>mm_chr11_17102006_17103044
          Length = 1039

 Score = 1160 bits (600), Expect = 0.0
 Identities = 627/636 (98%), Gaps = 1/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttagaattaaacccaaacacttacctagccatggatcacttcagacacttgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttagaattaaacccaaacacttacctagccatggatcacttcagacacttgga 264

                                                                       
Query: 65  aaggttttaaaaacatagacctcacttcccagaaaagtacatcacaaatctgagtctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggttttaaaaacatagacctcacttcccagaaaagtacatcacaaatctgagtctctc 324

                                                                       
Query: 125 actgggcacagtgagaatgggtctgtatctctgaaatgctctacagacttgtgaagtctg 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgggcacagtgagagtgggtctgtatctctgaaatgctctacagacttgtgaagtctg 384

                                                                       
Query: 185 tagaccgatatagcatgatactactactaaacattctcctttggtgaaacactccagcag 244
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ta-accgatagagcatgatactactactaaacattctcctttggtgaaacactccagcag 443

                                                                       
Query: 245 tgtcctgttggtagatggtaaagccaaggtctgggcagtagcacctcccactaaccagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcctgttggtagatggtaaagccaaggtctgggcagtagcacctcccactaaccagag 503

                                                                       
Query: 305 ggaacccaagcttaacacaagtacatgttactaaacagcatgacggcacacatttgtaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaacccaagcttaacacaagtacatgttactaaacagcatgacggcacacatttgtaac 563

                                                                       
Query: 365 cttggcacatgccaagttaaggcaccagaccgacccaagtttgaggcaaactggcctata 424
           | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 564 cctggcacatgccaagttaaggcaccagaccgacccaagtttgaggcaagctggcctaaa 623

                                                                       
Query: 425 cggtgagttacaggccagcctggactccatattctgtctcaaaagtcaggagcaggaacg 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cggtgagttacagaccagcctggactccatattctgtctcaaaagtcaggagcaggaacg 683

                                                                       
Query: 485 atgtttcagtgttgtgagcacttgctgctcttcccgaggactgcagcttaattcccactg 544
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgtctcagtgttgtgagcacttgctgctcttcccgaggactgcagcttaattcccactg 743

                                                                       
Query: 545 cccacaccaggggctcaaccatctgcaactactgctccaggagaaggaacatctacacac 604
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 744 cccacaccaggggctcaaccatctgcaactactgctccaggggaaggaacatctacacac 803

                                               
Query: 605 aagggaggcatacacgcataatacacacttgtccac 640
           ||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagggaggcatacacgcataatacacacttgtccac 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space:   648270
Effective search space used:   648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)