NNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCAAGGGCATGGAATCCAGGAAAGGGGATAACATTTGAAAT
GTAAATAGAGAAAATATCCTATAAAAAAAGGAACATAAAAAAGTTCTACA
ACACAAACACTTTTTATCTTCTGTAATATATGAATCCGATTAGTCGATGT
CACATTTTTTGTATGAACTACAGATTTCAATTGGCTGATGAAAGTTAAGC
ATATCCTTAGCCCTTAAGGATTTAAAGAAACACTGACATAGTTTCTTAAA
TAATTCCTTAAGAAAGTAGAGGCTGCATGGAGAACTCTGTTAAGTTCTAA
CAAATATTAGTTCTATCTCATTGAGTAGGCTATGTAGATAAATGAACTGC
TTTGCAATTATAGGTCCCAATTGAGTTAAGCTGTCACATTTTAATTTCTG
AAGCAAAAAGAAACCAATGGGTGTTCTTAAAGCTCTTAACAATCAACCTA
GAATGATATTTATCATTCACTGAGCTTTCTGTGGTACAAGGCATTTTTTT
TTCTGAAGACTGTATATACATTATTTTCTTCATTCTTGTGCAATTCCATG
AGGTAGTATTAACTCAAGTTTGCAGACTAGCAAAGAGACTCAGTTTCATA
TAACTTTAGTCCAGTCATCCAGCCTAGAAGTGGAAAGCTTCAGTTCAAAT
CCAAGTCTATTTGTCCCCAGATTGTGACAGCTACGTATAGGTAGAAATGA
TAGTTTGTTTCGCAGN

TAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTGAGGAATACCGGAATG
GCTGAGAAGCACCTGAAATAATGTTCAGCATCCGGGAAATGGACATCAAA
ACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATAAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGTATTTGGAGAAAGAGGAACAGTCC
TCCATTGTTGATGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCTCAGT
ACCTCTCCTGGGCATGTATCCAGAAGATGTTCCAACTGGTAAGAAAGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGG
AAAGAACCCAGATGCCCTTCAACAGAGGAATGAATACAGAAAATGTGGTA
CATTCACACAATGGAGTTCTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGGATGGACCTGGAGAGCATCATCCTGAGTGATGTA
ACCCAACAACAAAATAACTCACATGATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACATAGAATACCCCAGATACAAGATATAAAGCACATGAA
ACTCAAGAAAAACGAAAACCAAAGTTGACCCTTCTTAGAATTGAGAACAA
AACACCCATGG

Query= MSMg01no542_a20.b1 MSMg01no542_a20.b1 CHROMAT_FILE:
MSMg01no542_a20.b1 PHD_FILE: MSMg01no542_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:57 2005
         (672 letters)



>mm_chr11_30444012_30445083
          Length = 1072

 Score = 1286 bits (665), Expect = 0.0
 Identities = 668/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccaagggcatggaatccaggaaaggggataacatttgaaatgtaaatagagaa 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccaagggcagggaatccaggaaaggggataacatttgaaatgtaaatagagaa 263

                                                                       
Query: 64  aatatcctataaaaaaaggaacataaaaaagttctacaacacaaacactttttatcttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatatcctataaaaaaaggaacataaaaaagttctacaacacaaacactttttatcttct 323

                                                                       
Query: 124 gtaatatatgaatccgattagtcgatgtcacattttttgtatgaactacagatttcaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaatatatgaatccgattagtcgatgtcacattttttgtatgaactacagatttcaatt 383

                                                                       
Query: 184 ggctgatgaaagttaagcatatccttagcccttaaggatttaaagaaacactgacatagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctgatgaaagttaagcatatccttagcccttaaggatttaaagaaacactgacatagt 443

                                                                       
Query: 244 ttcttaaataattccttaagaaagtagaggctgcatggagaactctgttaagttctaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcttaaataattccttaagaaagtagaggctgcatggagaactctgttaagttctaaca 503

                                                                       
Query: 304 aatattagttctatctcattgagtaggctatgtagataaatgaactgctttgcaattata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatattagttctatctcattgagtaggctatgtagataaatgaactgctttgcaattata 563

                                                                       
Query: 364 ggtcccaattgagttaagctgtcacattttaatttctgaagcaaaaagaaaccaatgggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtcccaattgagttaagctgtcacattttaatttctgaagcaaaaagaaaccaatgggt 623

                                                                       
Query: 424 gttcttaaagctcttaacaatcaacctagaatgatatttatcattcactgagctttctgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttcttaaagctcttaacaatcaacctagaatgatatttatcattcactgagctttctgt 683

                                                                       
Query: 484 ggtacaaggcatttttttttctgaagactgtatatacattattttcttcattcttgtgca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtacaaggcatttttttttctgaagactgtatatacattattttcttcattcttgtgca 743

                                                                       
Query: 544 attccatgaggtagtattaactcaagtttgcagactagcaaagagactcagtttcatata 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attccatgaggtagtattaactcaagtttgcagactagcaaagagactcagtttcatata 803

                                                                       
Query: 604 actttagtccagtcatccagcctagaagtggaaagcttcagttcaaatccaagtctattt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 actttagtccagtcatccagcctagaagtggaaagcttcagttcaaatccaagtctattt 863

                    
Query: 664 gtccccaga 672
           |||||||||
Sbjct: 864 gtccccaga 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)