Query= MSMg01no542_g23.b1 MSMg01no542_g23.b1 CHROMAT_FILE:
MSMg01no542_g23.b1 PHD_FILE: MSMg01no542_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:28 2005
(706 letters)
>mm_chr11_44581845_44582950
Length = 1106
Score = 1135 bits (587), Expect = 0.0
Identities = 667/715 (93%), Gaps = 35/715 (4%)
Strand = Plus / Minus
Query: 4 ggaattctccatactgatatttctcaacaaaattttgctcacagagacattctcctatca 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ggaattctccatactaatatttctcaacaaaattttgctcacagagacattctcctatca 982
Query: 64 cagtctggggctattcattgactgctactgagtccagccttgatggagccaaaaaccacc 123
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 981 cagtctggggctattcattgactgctactgagtccagccttgatggaaccaaaaa----- 927
Query: 124 cacccacccacccaaacaaacaaacaaacaaaagaaacccatcatcccttgattcctatg 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 -------ccacccaaacaaacaaacaaacaaaagaaacccatcatcccttgattcctatg 874
Query: 184 gaaagtgcccagtaccttagtcacaggaaggcactattttgagatatacaaagaatcaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gaaagtgcccagtaccttagtcacaggaaggcactattttgagatatacaaagaatcaca 814
Query: 244 ataagtcacattggtgaaattggcactgatctgaggaccacgaggaaggcaaag------ 297
||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 813 ataagtcacattggtgaaattggcactgatctgagaaccatgaggaaggcaaaggactaa 754
Query: 298 ------gatagcctgggagatgacaaccataggtgacatctttcagtatgaggaagagaa 351
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 753 tttcttgatagcctgggagatgacaaccataggtgacatctttcagtatgaggaagagga 694
Query: 352 ggacatcaatgagtgacccaaggcctctgaaatcttgtcatagctcaacatcatggaaga 411
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggacatcaatgagtgacccaaagcctctgaaatcttgtcatagctcaacatcatggaaga 634
Query: 412 gtgtggggtccactagaggagcttgtctacaaggcaacccctctctgatcattccaactc 471
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct: 633 gtgtggggtccactagaggagcttgtctataaggcaacccttctcttctcattccaactc 574
Query: 472 acactcatacctctgattcccatcttccaaatataggcacaggcaggtacaagccaactg 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 573 acactcatacctctgattcccatcttccaactataggcacaggcaggtacaagccaactg 514
Query: 532 cagagaaaagtccctgaaaagtccctggtacccatgcacctgccagttgtcaccaggatg 591
|||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 513 caga-----------gaaaagtccctggtacccaagcacctgccagttgtcaccaggatg 465
Query: 592 gagcagaaactgaaggataaaactgaagcttcagtttctggacttcctgatgttctgaga 651
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaacagaaactgaaggataaaactgaagcttcagtttctggacttcctgatgttctgaga 405
Query: 652 gaagttggctattggatcttaacacaaatcttccaattctaaaatattaatccaa 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaagttggctattggatcttaacacaaatcttccaattctaaaatattaatccaa 350
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_g23.g1 MSMg01no542_g23.g1 CHROMAT_FILE:
MSMg01no542_g23.g1 PHD_FILE: MSMg01no542_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:28 2005
(337 letters)
>mm_chr11_44505866_44506601
Length = 736
Score = 557 bits (288), Expect = e-163
Identities = 323/341 (94%), Gaps = 9/341 (2%)
Strand = Plus / Plus
Query: 1 tttggtggaacatctccagattatattcttggacatcttatatgcacatttagacacctc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tttggtggaacatctccagattatattcttgggcatcttatatgcacatttagacacctc 260
Query: 61 atctatctttttgcctctctggaagtcatttagttgtctttctggttggagaatcctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctatctttttgcctctctggaagtcatttagttgtctttctggttggagaatcctcta 320
Query: 121 acatcaatggataaatgtgaaatataggaagagaagagccagagcaggatggatagcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcaatggataaatgtgaaatataggaagagaagagccagagcaggatggatagcacc 380
Query: 181 tgatgtcagagaaagggtgctataaaccaccacacgctggaggtggaggtggaggtggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtcagagaaagggtgctataaaccaccacacgctggaggtggaggtggaggtggtg 440
Query: 241 gaaggtggaggtgattcnntctctgtnnnca----atgacctctgccctggnnngggagg 296
|| |||||||||||||| ||||||| | |||||||||||||||| ||||||
Sbjct: 441 ga-ggtggaggtgattcactctctgt----acccgatgacctctgccctggaaagggagg 495
Query: 297 tcngatngttgccttctgtgtggcctggctcttcctgattg 337
|| ||| |||||||||||||||||||| |||||||||||||
Sbjct: 496 tcagatagttgccttctgtgtggcctgactcttcctgattg 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 736
Length adjustment: 9
Effective length of query: 328
Effective length of database: 727
Effective search space: 238456
Effective search space used: 238456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
