BAC Information

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BAC

Clone NameMSMg01-542H01
Chromosome11 (Build37)
Map Location 86,038,503 - 86,039,101
singlet/doubletsinglet
Overlap geneInts2
Upstream geneAppbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803
Downstream geneThrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542H01.T7 (MSMg01no542_h01.b1)MSMg01-542H01.TJ (MSMg01no542_h01.g1)
ACCAG608214AG608215
length767761
length of high quality
(start - end)
218 (43 - 260)618 (74 - 691)
definitionCHROMAT_FILE: MSMg01no542_h01.b1 PHD_FILE: MSMg01no542_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:28 2005CHROMAT_FILE: MSMg01no542_h01.g1 PHD_FILE: MSMg01no542_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGACCAGCCTTACATAAATGGACAGATATGTGAACCCTGCCTCAGAG
CAAATAAATACCAGAGGGCTACAGAGATGTTTCAGCAGTTAGGAGTGTTT
GATGCTCTTATAGAGAATTGAAGTTTGGGTCCTGGAACCCACTTCAAGAG
ACTCACAACTTGTAACTCCAGTTCCAAGGAATTAACACACACACCACACA
CACACACACACACACACACACGCACACACACACGCACACACGTGTCTGTG
TGTGTGGGTTCACGTGTGTGCATAAATAAAAATAAATTTCTAAAAATTAT
CAGCTGAAAAGTAAAACTGAGTAGCAGCCATGGGCAGAAGTATTATCTGA
TTGATTAATTAATTAGTTAAGTAATTAATTTTAGGGACTAGGACCAAACC
CGGGCAAGTGCTCTACCGCTGAACTAAATCCTCAAGTCTAATAAGATTAC
TAATTCAGAAAGTAAGAAACGAGTTTAGCCAGAGTTCATGGGGACAAAAA
TCCAGAGACAGCCCTGAGCTGTCTTCCGACTGGCCCAGCCTCTTGCCTCT
GCCCTTCCTTGCCTGTGTATCTCTTTCCTTTGTGGACTTGCCCTGCTACT
GTTCACGTCGCTGCTCTCCCATAATTGTGGCTTTTGTGAACTTTATCCTT
GATGCCAACTTTAGCCTCCCCCTGAACTGCTCCTCTAAAGCCCCATACTT
ACCGCATTCAATGGGTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCGTGGAACCCCAGAATTCAGCAGCT
GGTTCATATTGGACGTTAGTACTTCTGCATATGGAATAAGTTCACTGGCA
GAAAGTAGAGTCAAGTGTTCCATAATCTGCATCACTTGTGTGTGACTTAC
AGGGACAGCTGAAAATGCTAAAGACAACATTTTGCAATCATTCCTAAATC
CTATAATGTTTACCAAGTAGAGATAAATGCTGCTTTCTTAAAAGTAGGAA
TGAAACAAATCAAGAAAGCAATGGTGTTAAATTAAAGCCTTCCACTCACA
GCTACTTTTTCACTGAAGCTAACATTAAAGCCATTAGAAAACTTCCCAGT
TAGCAGCAGGTGATGGCTCAGCAGGTCAAGGCAAGTGACGCCTGACAAGC
TGAGTTCCATCCCTGCACACACATGAAGGATGGGATCAGCTCCCTCATGT
TATCCTGACTTCCACATGTGCAGTATGGCATGTTCAAGACCCCACACAAA
CATATACTAAACAAATAAATTAGAATGTAATAAAAATAAGTGAAACTCCA
TGAAAGTACAGATGTTATTTCATAAAGTTCATTTTAAAAATCCTAGTAGT
GACACAATAGCTAACCTCATTTTTGGGGGTAACCGCTTGTGTAGTTTATT
AATTTGGAAGTTTCAGGCTCCTTGATACTTTCTTCTAGGTGTCCAATTAC
AGAAGATTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_h01.g1 MSMg01no542_h01.g1 CHROMAT_FILE:
MSMg01no542_h01.g1 PHD_FILE: MSMg01no542_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:28 2005
         (618 letters)



>mm_chr11_86038303_86039320
          Length = 1018

 Score = 1102 bits (570), Expect = 0.0
 Identities = 597/618 (96%), Gaps = 19/618 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgtggaaccccagaattcagcagctggttcatattggacgttagtacttctgcatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccgtggaaccccagaattcagcagctggttcatattggacgttagtacttctgcatatg 260

                                                                       
Query: 61  gaataagttcactggcagaaagtagagtcaagtgttccataatctgcatcacttgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataagttcactggcagaaagtagagtcaagtgttccataatctgcatcacttgtgtgt 320

                                                                       
Query: 121 gacttacagggacagctgaaaatgctaaagacaacattttgcaatcattcctaaatccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttacagggacagctgaaaatgctaaagacaacattttgcaatcattcctaaatccta 380

                                                                       
Query: 181 taatgtttaccaagtagagataaatgctgctttcttaaaagtaggaatgaaacaaatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgtttaccaagtagagataaatgctgctttcttaaaagtaggaatgaaacaaatcaa 440

                                                                       
Query: 241 gaaagcaatggtgttaaattaaagccttccactcacagctactttttcactgaagctaac 300
           ||||||                   |||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagc-------------------cttccactcacagctactttttcactgaagctaac 481

                                                                       
Query: 301 attaaagccattagaaaacttcccagttagcagcaggtgatggctcagcaggtcaaggca 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 482 attaaagccattagaaaacttcccagttagcagcaggtgatggcccagcaggtcaaggca 541

                                                                       
Query: 361 agtgacgcctgacaagctgagttccatccctgcacacacatgaaggatgggatcagctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtgacgcctgacaagctgagttccatccctgcacacacatgaaggatgggatcagctcc 601

                                                                       
Query: 421 ctcatgttatcctgacttccacatgtgcagtatggcatgttcaagaccccacacaaacat 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 602 ctcatgttatcctgacttccacatgtgcagtatggcatgtgcaagaccccacacaaacat 661

                                                                       
Query: 481 atactaaacaaataaattagaatgtaataaaaataagtgaaactccatgaaagtacagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atactaaacaaataaattagaatgtaataaaaataagtgaaactccatgaaagtacagat 721

                                                                       
Query: 541 gttatttcataaagttcattttaaaaatcctagtagtgacacaatagctaacctcatttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gttatttcataaagttcattttaaaaatcctagtagtgacacaatagctaacctcatttt 781

                             
Query: 601 tgggggtaaccgcttgtg 618
           ||||||||||||||||||
Sbjct: 782 tgggggtaaccgcttgtg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)