Query= MSMg01no542_n04.b1 MSMg01no542_n04.b1 CHROMAT_FILE:
MSMg01no542_n04.b1 PHD_FILE: MSMg01no542_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:59 2005
(705 letters)
>mm_chr11_102987806_102988909
Length = 1104
Score = 1290 bits (667), Expect = 0.0
Identities = 695/705 (98%), Gaps = 5/705 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaggccagcctggtctacatattgagttccaagcccagagctacatagtgaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ggaattcaaggccagcctggtctacatattgagttccaagcccagagctacatagtgaga 910
Query: 64 cctcatctcaaaacaaaagggataggggctagatgtggtgtcacacagcggtaattcggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 cctcatctcaaaacaaaagggataggggctagatgtggtgtcacacagcggtaattcggt 850
Query: 124 aattctaagactggggaaac--ttttttttcttgg-ttttttgaaacagggtttctctgt 180
|||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 849 aattctaacactggggaaacttttttttttcttggtttttttgaaacagggtttctctgt 790
Query: 181 atagtcctggctctcctggatctcactctgtagaccatactggcctggaactcagaaatg 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 789 atagtcctggctctcctggatctcactctgtagaccatgctggcctggaactcagaaatt 730
Query: 241 tgcctgcctctgccttgcaagtgctgggattaaaggcgtatgccaccactgcccggcaac 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 729 tgcctgcctctgccttgcaagtgctgggattaaaggcatatgccaccactgcccggcaac 670
Query: 301 actagggaaacttaaggcaagaggttcaggaattcagggccagctgtaggtgcatggtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 actagggaaacttaaggcaagaggttcaggaattcagggccagctgtaggtgcatggtta 610
Query: 361 gtttgaggccagcttgggttacatgatagcctgtcaaagctagagagaaaataatggctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtttgaggccagcttgggttacatgatagcctgtcaaagctagagagaaaataatggctt 550
Query: 421 acagatgagactttaaagtctgaatttttacttgtatatgtgtggtgtgtgcatatgtgt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 -cagatgagactttaaagtctgaatttttacttgtatatgtgtggtgtgtgcatatgtgt 491
Query: 481 gcaggttgcatatgcatgcagcggccatagaggtcaggtgtctttctcttttgctttcca 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcaggttgcatatgcatgcagaggccatagaggtcaggtgtctttctcttttgctttcca 431
Query: 541 ccttgtcttttgagacagggtcttactgaagccagagctgacatttgattagctagcaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccttgtcttttgagacagggtcttactgaagccagagctgacatttgattagctagcaag 371
Query: 601 ctctgaggagcaaaactctggttctcatgtttggtgatcaaccactttacctactaaatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctctgaggagcaaaactctggttctcatgtttggtgatcaaccactttacctactaaatg 311
Query: 661 atctccctaatccgaaatttttattattcttggaaaaaaaaaagg 705
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 310 atctccctaatccgaaatttttattattcttg-aaaaaaaaaagg 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1104
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1094
Effective search space: 760330
Effective search space used: 760330
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_n04.g1 MSMg01no542_n04.g1 CHROMAT_FILE:
MSMg01no542_n04.g1 PHD_FILE: MSMg01no542_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:59 2005
(675 letters)
>mm_chr11_102817711_102818785
Length = 1075
Score = 1266 bits (655), Expect = 0.0
Identities = 670/675 (99%)
Strand = Plus / Plus
Query: 1 cctcacttccagcccagcaagagaagtgatagagctagttggggcagaaggttaagtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcacttccagcccagcaagagaagtgatagagctagttggggcagaaggttaagtcct 260
Query: 61 gctgaaaatgctttagcctacagagaagaactctgagctgcaggcccacaggcctcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgaaaatgctttagcctacagagaagaactctgagctgcaggcccacaggcctcctcc 320
Query: 121 tatccagaacactcccgaacagaatcctccaaggacttccagggggtgggggcgtgttgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccagaacactcccgaacagaatcctccaaggacttccagggggtgggggcgtgttgt 380
Query: 181 gttatccaagatgtcggaagatccttcctaaatcccagccgggagacatgggtagatgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatccaagatgtcggaagatccttcctaaatcccagccgggagacatgggtagatgca 440
Query: 241 ggaggttggctataaaggagagaaccctctatttgacaggaattcagcaggctccctgat 300
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ggaggttggctataaaggagaaaaccctctatttgacaggaattctgcaggctccctgat 500
Query: 301 tcagaactgtggctgatatttctagatctacggggccacatgggctaagctttgcaaagt 360
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 501 tcagaactgtggctgatatttctagatctgcggggctacatgggctaagctttgcaaagt 560
Query: 361 taggagctgaactcaggagtcctgaacacctgtctctgcacaacagccataccctccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggagctgaactcaggagtcctgaacacctgtctctgcacaacagccataccctccctc 620
Query: 421 cctcccgtggtcctctcttgccagatccctcccgccagcttccagcctgggagccccagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcccgtggtcctctcttgccagatccctcccgccagcttccagcctgggagccccagc 680
Query: 481 tggcgcaggatgtcttgctcctcggcagctgagatttgtaaatatttataggaacacgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcgcaggatgtcttgctcctcggcagctgagatttgtaaatatttataggaacacgaa 740
Query: 541 cagatcagtggctgacaggcccggggagcagcagaggctctgcctgcagcccagcagctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatcagtggctgacaggcccggggagcagcagaggctctgcctgcagcccagcagctt 800
Query: 601 ccttactctctggcctgatttgagagagtccaggatgacaaagcgggtggtcagaaaggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccttactctctggcctgatttgagagagtccaggatgacaaagcgggtggtcagaaaggg 860
Query: 661 tgtggggctggctgc 675
|||||||||||||||
Sbjct: 861 tgtggggctggctgc 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
