BAC Information

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BAC

Clone NameMSMg01-542P04
Chromosome11 (Build37)
Map Location 93,823,415 - 93,823,887
singlet/doubletsinglet
Overlap geneNme1
Upstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2
Downstream geneSpag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542P04.T7 (MSMg01no542_p04.b1)MSMg01-542P04.TJ (MSMg01no542_p04.g1)
ACCAG608600AG608601
length780750
length of high quality
(start - end)		654 (44 - 697)676 (75 - 750)
definitionCHROMAT_FILE: MSMg01no542_p04.b1 PHD_FILE: MSMg01no542_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:08 2005CHROMAT_FILE: MSMg01no542_p04.g1 PHD_FILE: MSMg01no542_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
GTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAA
ACTCACACAATATATATTCACTGATAAGTGGATATTAGCCCCAAACCTAG
GATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAG
AATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTTGGAACAA
AACACCCATGGAAGGAGTTACAGAGACGGA

NCCCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCATGTAGCTTAGGCTGACCACAGG
TACTCCAGGCTGGCCTGGAGCTTTTGATTCTTCCACTTTAGAGTGTATTG
GGATAACCACACCAGACACAACTTTGCTTTTTAAAGTACAGACAGAAGGT
TGGATGGTAAGAAGGAGGATGGGGTGAGAAGTGTTCAGGGACCACATGCT
GTCAGGGCTCTGCTGTTATATTACCAGGGCTGGGAAGATATGGGAGGTGG
CATGGTTAGCATTTTATTTATTTGTTTTGGCTTTTTGAGACAGGGTCAGC
CTTAGTCACTGCTCTGTTGCTGTGAAAAGACACCATGGCCAAGGCAAGTC
TTATAAAAGAAAGTGTAATTAGAGCCTGCTTACAGTCTCAGTGGTTTAGT
CTGCTATCATCATGGCAGGCATGCCTGTCTGCTTGCAGGCAGACGTGGTG
TTGGAGAAATTGAGACATCCAGATCTGAAGGCCCCGGAAAAAGGTGCCAT
TGGGCCTGGCTTGGGCTTTTAAAACTCAAAGCTCACCCCAAGTGCCACAC
TTCTTCCAAAAAAGGCCACATCTGCTAATCCTTTTTAAGAATGCCACTCC
CTGGTGATTAAGCATTCAAATCTATATAAATAAGCCTTCAGGGCCATTTT
TATTCAAACTACCACATTTCACTTTCTGGTCCCATAGACTTGAAGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_p04.g1 MSMg01no542_p04.g1 CHROMAT_FILE:
MSMg01no542_p04.g1 PHD_FILE: MSMg01no542_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:08 2005
         (676 letters)



>mm_chr11_93823415_93824489
          Length = 1075

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgtagcttaggctgaccacaggtactccaggctggcctggagcttttgattcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 accatgtagcttaggctgaccacaggtactccaggctggcctggagcttttgattcttcc 414

                                                                       
Query: 61  actttagagtgtattgggataaccacaccagacacaactttgctttttaaagtacagaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 413 actttagagtgtattgggataaccacaccagacacaactttgctttttaaag-acagaca 355

                                                                       
Query: 121 gaaggttggatggtaagaaggaggatggggtgagaagtgttcagggaccacatgctgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaaggttggatggtaagaaggaggatggggtgagaagtgttcagggaccacatgctgtca 295

                                                                       
Query: 181 gggctctgctgttatattaccagggctgggaagatatgggaggtggcatggttagcattt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggactctgctgttatattaccagggctgggaagatatgggaggtggcatggttagcattt 235

                                                                       
Query: 241 tatttatttgttttggctttttgagacagggtcagccttagtcactgctctgttgctgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 234 tatttatttgttttggctttttgagacagggtcagccttagtcactgctctgttgctgta 175

                                                                       
Query: 301 aaaagacaccatggccaaggcaagtcttataaaagaaagtgtaattagagcctgcttaca 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 174 aaaagacaccatggccaaggcaactcttataaaagaaagtgtaattagagcctgcttaca 115

                                                                       
Query: 361 gtctcagtggtttagtctgctatcatcatggcaggcatgcctgtctgcttgcaggcagac 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 114 gtctcagtggtttagtctgctatcatcatggcaggcatgcctgtctgcatgcaggcagac 55

                                                                 
Query: 421 gtggtgttggagaaattgagacatccagatctgaaggccccggaaaaaggtgcc 474
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  atggtgttggagaaattgagacatccagatctgaaggccccggaaaaaggtgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space:   709290
Effective search space used:   709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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