Query= MSMg01no543_a23.b1 MSMg01no543_a23.b1 CHROMAT_FILE:
MSMg01no543_a23.b1 PHD_FILE: MSMg01no543_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:18 2005
(675 letters)
>mm_chr11_42835052_42836125
Length = 1074
Score = 1234 bits (638), Expect = 0.0
Identities = 663/674 (98%), Gaps = 6/674 (0%)
Strand = Plus / Plus
Query: 7 gaattcattaggtccttgccaaatacacattgcctcaaacatgccttttaaaaatttatt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcattaggtccttgccaaatacacattgcctcaaacatgccttttaaaaatttatt 261
Query: 67 cattgagaatttcatacatgtatacaatatactttaattattatgattatatccactcct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cattgagaatttcatacatgtatacaatatactttaattattatgattatatccactcct 321
Query: 127 ttattcctcctatcctcccaaactcctccctctcccatatccctctatcttttcttataa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttattcctcctatcctcccaaactcctccctctcccatatccctctatcttttcttataa 381
Query: 187 cccactaagtcctattggtactgctcatatgcacatgggtgtggcaccatccacctaaga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cccactaagtcctattggtactgctcatatgcacatgggtgtggcaccatccacctaaga 441
Query: 247 acatgagcgtcttaccaggatccacatccct-----aaactgacttattccactccacca 301
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 acatgagcatcttaccaggatccacatccctgaaggaaactgacttattccactccacca 501
Query: 302 gcagccaccaacttacactagctccccaactaggcttggttctgatggcaaacctgattc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcagccaccaacttacactagctccccaactaggcttggttctgatggcaaacctgattc 561
Query: 362 caaagccagtttatgatcttcagagtacattttatttgttaatttgtcatgataataaag 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaaagccagtttatgatcttcagagtacattttatttgttaatttgtcatgataataaag 621
Query: 422 agagcaataaggttctgggttctggtaattcttaatatctgttggtgtatgtgcattgta 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agagcaataaggttctaggttctggtaattcttaatatctgttggtgtatgtgcattgta 681
Query: 482 caaaggtatacacatacacagacaatagattctgtattccctatgagtatgactttagta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caaaggtatacacatacacagacaatagattctgtattccctatgagtatgactttagta 741
Query: 542 ccagtagctctattcccctgacatcaaattcaagtgcttgggaataacattgaaaataga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccagtagctctattcccctgacatcaaattcaagtgcttgggaataacattgaaaataga 801
Query: 602 tggctgtgttggaaaaataaaaaaatcaagacatgaagaatgtggagactgatgtacatt 661
|||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 802 tggctgtgtttgaaaaataaaata-tcaagacatgaagaatgtggagactgatgtacatt 860
Query: 662 tcagagctcaaagg 675
||||||||||||||
Sbjct: 861 tcagagctcaaagg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_a23.g1 MSMg01no543_a23.g1 CHROMAT_FILE:
MSMg01no543_a23.g1 PHD_FILE: MSMg01no543_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:18 2005
(628 letters)
>mm_chr11_42989951_42990978
Length = 1028
Score = 1185 bits (613), Expect = 0.0
Identities = 625/629 (99%), Gaps = 2/629 (0%)
Strand = Plus / Minus
Query: 1 cactcgtggaaagagaagaagaaanctacttgagccaggggaattgtcactttcacctgt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 828 cactcgtggaaagagaagaagaaa-ctacttgagccaggggaattgtcactttcacctgt 770
Query: 61 catgattatgtctgtatcaaatccaggaaaatgtccccttctctaaagttttataggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 catgattatgtctgtatcaaatccaggaaaatgtccccttctctaaagttttataggaat 710
Query: 121 gtaaatgagtacttgttttaaaaaatgttcccaggcaccttaatatattgtacattgaac 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 709 gtaaatgagtacttgttttaaaaaatgttctcaggcaccttaatatattgtacattgaac 650
Query: 181 ccttcatgaagatatctatggggttctagcttattagtttgacttgaccatgaaccataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ccttcatgaagatatctatggggttctagcttattagtttgacttgaccatgaaccataa 590
Query: 241 ttttcaagagctagggactgtgttgggtttattctgctttgggaaatgcttgtccaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttttcaagagctagggactgtgttgggtttattctgctttgggaaatgcttgtccaaaga 530
Query: 301 agccaacttcaatttctcaccatttctgagtaatgtaaataagatttgaggtagggactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agccaacttcaatttctcaccatttctgagtaatgtaaataagatttgaggtagggactt 470
Query: 361 ctagcaatgtctgaggtttgtaaaagtcctttgggaagaatgagggtctcatagaaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctagcaatgtctgaggtttgtaaaagtcctttgggaagaatgagggtctcatagaaaata 410
Query: 421 gaaatgtagag-aaaaaaaaaccaagttaacaaaaagccattgaaactcattattcaaga 479
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaaatgtagagaaaaaaaaaaacaagttaacaaaaagccattgaaactcattattcaaga 350
Query: 480 ctgttaagtttctacagaaatcaaatcatattaggaggtgtttacaacttctgagacaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgttaagtttctacagaaatcaaatcatattaggaggtgtttacaacttctgagacaat 290
Query: 540 agtgagatctgtctttactgttccccagaattttcatctctcagaagaggttagcaatgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agtgagatctgtctttactgttccccagaattttcatctctcagaagaggttagcaatgc 230
Query: 600 ctaccttacagggtgaggtatggacccaa 628
|||||||||||||||||||||||||||||
Sbjct: 229 ctaccttacagggtgaggtatggacccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
