Query= MSMg01no543_b11.b1 MSMg01no543_b11.b1 CHROMAT_FILE:
MSMg01no543_b11.b1 PHD_FILE: MSMg01no543_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:20 2005
(662 letters)
>mm_chr11_76295337_76296398
Length = 1062
Score = 1249 bits (646), Expect = 0.0
Identities = 655/658 (99%)
Strand = Plus / Minus
Query: 5 gaattcttttgacagcttctctctaatccttgccataagctggaccagggaggaggacgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattcttttgacagcttctctctaatccttgccataagctggaccagggaggaggacgg 803
Query: 65 aggtagctgatgtgctagctccctggtcctaatatcaatgttggctcaagctcagtgaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aggtagctgatgtgctagctccctggtcctaatatcaatgttggctcaagctcagtgaga 743
Query: 125 ggagcctggcctttgagcctgtatgtgagtcttcagataaaaagtaacttactaaggacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggagcctggcctttgagcctgtatgtgagtcttcagataaaaagtaacttactaaggacc 683
Query: 185 agccagaccatcccccttcaccatggataatggagatgagagcaaaaaagtcagtccttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agccagaccatcccccttcaccatggataatggagatgagagcaaaaaagtcagtccttc 623
Query: 245 atctggtgagaaagtttcaggcaggctggcccatgtgactggccctggtgagagcgcttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atctggtgagaaagtttcaggcaggctggcccatgtgactggccctggtgagagcgcttt 563
Query: 305 tcttcccctttcacagacagtgggaagttcaggaggaagcagggctgttgggcctgtctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcttcccctttcacagacagtgggaagttcaggaggaagcagggctgttgggcctgtctc 503
Query: 365 ggtggaggttgaccagtgtgtgcttccccagcagtcgcttctgagaagtctcggccttcc 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggcggaggttgaccagtgtgtgcttccccagcagtcgcttctgagaagtctcggccttcc 443
Query: 425 cagagctgttctcctctttcctttatgccctccacctggggattgtgccaaggcacagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagagctgttctcctctttcctttatgccctccacctggggattgtgccaaggcacagga 383
Query: 485 tgagtggctttggggctccaaggcaatttgtacctgtccattggattagatggagatgtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgagtggctttggggctccaaggcaatttgtacctgtccattggattagatggagatgtt 323
Query: 545 atgtcacatctgaagggaagtcccctgtatccttccacctgggcatgggagcacgctgtg 604
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 atgtcacatctgaagggaagtcccctgtatcctttcacctgggcatgggagcacgctgtg 263
Query: 605 ccttcctcctagttcctcctgctgccttgcctgtgtgtccccgcagctctcctcctgc 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 262 ccttcctcctagttcctcctgctgccttgcctgtgtgaccccgcagctctcctcctgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_b11.g1 MSMg01no543_b11.g1 CHROMAT_FILE:
MSMg01no543_b11.g1 PHD_FILE: MSMg01no543_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:20 2005
(682 letters)
>mm_chr11_76134750_76135828
Length = 1079
Score = 1265 bits (654), Expect = 0.0
Identities = 674/682 (98%), Gaps = 3/682 (0%)
Strand = Plus / Plus
Query: 1 tgggagcaggagtttgttcaggatgacatgacgtataacaaggttttcataaaagctata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggagcaggagtttgttcaggatgacatgacgtataacaaggttttcataaaagctata 260
Query: 61 tgagcaagacatgcatgacttcacttttgctgttgttttgtatgaatgagtggcacgggg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgagcaagacatgcatgacttcacttttgctgttgttttgtatgaatgagtggcactggg 320
Query: 121 gtagagtttagagctctgaacacactaagcaaatgttgttctatgacctgcatcccacca 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtagagtttagagctctgaacacactaagcaaatgtt---ctatgacctgcatcccacca 377
Query: 181 agctacatatccatcctttgcaccagagtgggaggaagactctagaaagggttacaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agctacatatccatcctttgcaccagagtgggaggaagactctagaaagggttacaaact 437
Query: 241 ttgcaacccatttatattctccagtcctctatttggcctgttcatctcttaagacgcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttgcaacccatttatattctccagtcctctatttggcctgttcatctcttaagacgcaaa 497
Query: 301 ccatcgttcaaagtgaatgttgttttctttgctcttcgctcatgctctcttctgaagaaa 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccatcattcaaagtgaatgttgttttctttgctcttcgctcatgctctcttctgaagaaa 557
Query: 361 gggcttcctgccgacctgggggactacaatgctgccctttggtgcccttgaacagtttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gggcttcctgccgacctgggggactacaatgctgccctttggtgcccttgaacagtttta 617
Query: 421 aatcaggactgcaaatatagctcaaaatgacagcacaggatcccaggaaaggcagagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatcaggactgcaaatatagctcaaaatgacagcacaggatcccaggaaaggcagagaga 677
Query: 481 gactgggacggagagggcccatcccaagccaaggcatctgcatcaagaacccacctggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gactgggacggagagggcccatcccaagccaaggcatctgcatcaagaacccacctggcc 737
Query: 541 gaagtgcctgacttttcaaccgaggcagctcctggtcccccgagtcaggccgagcagact 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaagtgcctgacttttcaacccaggcagctcctggtcccccgagtcaggccgagcagact 797
Query: 601 gcagtcatgaaaactatgcaaggctatggtcttgtacagagtctcgccaacattattctt 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 798 gcagtcatgaaaactatgcaaggctatggtcttgtacagaatctcgccaacattattctt 857
Query: 661 ggctctcctaacattgctttgg 682
|||||| |||||||||||||||
Sbjct: 858 ggctctgctaacattgctttgg 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1079
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1069
Effective search space: 718368
Effective search space used: 718368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
