NGGGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGAGGAATACCGAATGGCTGAGAAACACCTGAAAAA
ATGTTCAACATCTTTAATCATCAGGGAAATTCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGCCTAAGATCAAAAATTCATGTGAC
AGCAGATGCTGGCAAGGATGTGGTAACAGAGGAACACCTCCATTGCTGGG
GGATTGCAAGCTGATACAACCACTCTGGAAATAGTCTGGTGGTTCCTCAG
AAAATTGGACATAGTACTACTGAAGTATCCAGCAATAAATCTCCTGGGCA
TATACCCAGAAGATGTTGCAACTGGTAAGAAGGACACATTCTCCACTATG
TTCAGAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
ACACTCAACAGACGAATGGGTACAGAAAATGTGGTACATTTACACAATGG
AGTAATACTCAGCTCTTAAAAACAATATATTTATGAAATTCTTAGGCAAA
TGGATGGATCTGGAGGATATCATCCTGAGTGAGGTATCCCAATCACAAAA
AAACCTCACATGATATGCACTCAGTGATACGTGGATATTAGCCTAGAAAC
TTATAATTCCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAG
GAAGAACAAAGTGTGAATACTTCGCTCCTCCTTAGAATGGGGAAACAAAT
ACACATGGAGGGAGTTACAGAGAT

NCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTGGATGGGCTATCTGGG
AATAAGAGTAAAAAGGATAGTTTTTAAATTATTCCATTCTTTTATTTATT
TCAGCTTCTATCAAGTAAACATCTGTGTTAGGCTGGCTGATCTCTATAGA
GTCTACTGGTAAAAGTTCAGATGACAGCAGTGTAACCCATTGAAAGGGTT
TCCCCCACACTGGATTCAGAATGCTACAGTGATAGCCCCACCTTGCCCTA
TTTGTTAGGCTTTCTTACATTCTAAAATAGCATTTAACAACAAAATATTA
CATAGTGAAATTTAAAAAGAGAAAGCCTAGGGAATTTTTAATTTGACAAA
CAAAACATTAAATCTATATATCAGCTTCAACATTGACGAATAAAAACATA
AGCACACTATATCATTTGTGCAATAAAGACATAGGTTTAAAGTTCATTAA
ACATTTGTTATTTGCCCTTTTAAACACTTTCACACAAAAATATTTTTGAC
GTATATATTTTTTTAGAATATTTGGAAATATATATCTACAAGTGACTCTG
TGGTTACAGTTAAGCTCTGGTTTTTGCTACTTTTTCTCCTATCTTTGGAC
CTTCTTACCCTCTCTCTTCCTCTTGTCTGTCTCCGTCTGACATGCTTTTG
CTCCCTGGCTTCCTCTCAGAATCCTGTCCCCGAGCTGAATACTCTGCTCT
GCTCTGGACTGTCAGACA

Query= MSMg01no543_d20.g1 MSMg01no543_d20.g1 CHROMAT_FILE:
MSMg01no543_d20.g1 PHD_FILE: MSMg01no543_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:32 2005
         (653 letters)



>mm_chr11_41945940_41946992
          Length = 1053

 Score = 1214 bits (628), Expect = 0.0
 Identities = 646/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtggatgggctatctgggaataagagtaaaaaggatagtttttaaattattccatt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtgaatgggctatctgggaataagagtaaaaaggatagtttttaaattattccatt 260

                                                                       
Query: 61  cttttatttatttcagcttctatcaagtaaacatctgtgttaggctggctgatctctata 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttatttatttcagattctatcaagtaaacatctgtgttaggctggctgatctctata 320

                                                                       
Query: 121 gagtctactggtaaaagttcagatgacagcagtgtaacccattgaaagggtttcccccac 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gagtctactggtaaaagttcagatgacagcagtgtagcccattgaaagggtttcccccac 380

                                                                       
Query: 181 actggattcagaatgctacagtgatagccccaccttgccctatttgttaggctttcttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggattcagaatgctacagtgatagccccaccttgccctatttgttaggctttcttac 440

                                                                       
Query: 241 attctaaaatagcatttaacaacaaaatattacatagtgaaatttaaaaagagaaagcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctaaaatagcatttaacaacaaaatattacatagtgaaatttaaaaagagaaagcct 500

                                                                       
Query: 301 agggaatttttaatttgacaaacaaaacattaaatctatatatcagcttcaacattgacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggaatttttaatttgacaaacaaaacattaaatctatatatcagcttcaacattgacg 560

                                                                       
Query: 361 aataaaaacataagcacactatatcatttgtgcaataaagacataggtttaaagttcatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaaaacataagcacactatatcatttgtgcaataaagacataggtttaaagttcatt 620

                                                                       
Query: 421 aaacatttgttatttgcccttttaaacactttcacacaaaaatatttttgacgtatatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacatttgttatttgcccttttaaacactttcacacaaaaatatttttgacgtatatat 680

                                                                       
Query: 481 ttttttagaatatttggaaatatatatctacaagtgactctgtggttacagttaagctct 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 ttttttagaatatttggaaatatatatctacaaatgactctgtggttacagttaagctct 740

                                                                       
Query: 541 ggtttttgctactttttctcctatctttggaccttcttaccctctctcttcctcttgtct 600
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggttttttctactttttctcctatctttggaccttcttaccctctctcttcctcttgtct 800

                                                               
Query: 601 gtctccgtctgacatgcttttgctccctggcttcctctcagaatcctgtccc 652
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atctccgtctgacatgcttttgctccctggcttcctctcagaatcctgtccc 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)