CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTACAGGTATGCAGACGTGACTCAGCCTAAGCAAATCAATAAACA
TAACACATAAATAAAATCAAGGCTTAAAAAAAATCACATGATCATCTCAA
CATGATCATCTTTCTGGAAAGAAAGTTTTAAATAGAACTGAACAGTCCTT
CATGATGCCAACCCTAAGGAATCTAGGAACATAAGGATCATACCTCAACA
CAATAAAAAATCTGAGAACAGTTAACATTACACTGCTGGAAAAGTGATAC
CATTTCCATGTTGAAATTGGATATGAAAGAAAGTTATCCTTTCTGCTCTT
ATTCAACACAGTGCTCGATGTCTTAACAATAACACACTAAGAGGGAATAC
AAACAACAGAAGCCACCAGATTATAGCCATTTGCTAACTATATGATCATA
TATCTAAAGGGCTCCAAAGACATCATTAGATCAGATAAACATTTTCAGTA
ATGTAACAGTATAAAAAAATCCTAATACATAAGTCTTCTATATATCAAAC
TCACTATAAAACAATCAACAAAACTCTAGGAGTAAAACTATCAAGGTTGT
GAAAGACCTATACAATGACAACTATAGAACTAAGAAGAAATTTAAACACT
AGAAGATGAATATATTTCCAATATTCATGCCCAAGAAGAATTAAAGCTGT
GAAAATGGCCCTATCACCAAAATGGGTTTGCACATTCAGTGTAATCCCCA
TCAAAACTCCAA

TTCTTCTTCTTCTCCTTCTCTCTCCCTCTTCTCCTTCTTNNTGGGGTTTT
TTTTNTTTNNTCCCCAATTTACTAGTGGGGGNTAGGGCCCTGGGNGNGNC
CCGGCCCCTGGGTTTCTTCTCCGANNACATTTTTTAAGGGTGTAACAACT
TAATTTAGAAAAGGTATTCCGNCGGGNAAATTTCTCCACCTTGNAGGNAA
ATNNACCGNNAATGGGGCAGAAGGAAAAGCCACCCCTGGAAAAAAAAAAA
TGGTTTTCCAAACCATTCCCCTTTTAAAATTCCAATTCCAAGGGGAAAAA
AATTGCCAAAAATCAAAAAAACAAACCCCTTGGAGAAATTTCCCCCCCCC
TTCCCACAACCCAGGTTCCAAGAAATTGGGCCCTAAAAGAAATTCAAAAT
TAATTTCCCAGGGGGTGAACAAAGCCCCAAAATGGCCTTGGGCCCAAAGG
GATATTGTTGGGGGTANAAAAAAAAGAAAGGGGAAAACCCACCCCCCCCC
CCCTCCCCCCTTTTTGGGGTTGGGGGGGGTGGGGGGGGAAAATATTTGTT
CCCCAGAGGGTGTTTTTTTGTTTGAAAAAACAAAACACCTCTCCCCCTGT
GGGAAAAAAATCCCCCCTTTTGGGGGGGGGGGGTGTTTCCTCCCCAAAAA
AAAAATATTGTGGGAAAAAAATATAACACCCCCACCCCCCGGGGAGGGGA
GACCCCCCCCGCCCCCNTATAATATTTTCCCCTCCTTTTTCTTTCTCTTT
GTGGGGGGGGGGTGGTTATTTTATTTTTTAATCTTCCTCCCCCCAAGACA
GAGAAAGAANNNAAGAAGATATTGCTGCGCCCCCCCCCNATATTGGTGTT
GTGGGTTGGTAGAATAAAAAA

Query= MSMg01no543_f15.b1 MSMg01no543_f15.b1 CHROMAT_FILE:
MSMg01no543_f15.b1 PHD_FILE: MSMg01no543_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:41 2005
         (522 letters)



>mm_chr11_17842659_17843580
          Length = 922

 Score = 1009 bits (522), Expect = 0.0
 Identities = 522/522 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaataaacataacacataaataaaatcaaggcttaaaaaaaatcacatgatcatctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaataaacataacacataaataaaatcaaggcttaaaaaaaatcacatgatcatctcaa 260

                                                                       
Query: 61  catgatcatctttctggaaagaaagttttaaatagaactgaacagtccttcatgatgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatcatctttctggaaagaaagttttaaatagaactgaacagtccttcatgatgcca 320

                                                                       
Query: 121 accctaaggaatctaggaacataaggatcatacctcaacacaataaaaaatctgagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctaaggaatctaggaacataaggatcatacctcaacacaataaaaaatctgagaaca 380

                                                                       
Query: 181 gttaacattacactgctggaaaagtgataccatttccatgttgaaattggatatgaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaacattacactgctggaaaagtgataccatttccatgttgaaattggatatgaaaga 440

                                                                       
Query: 241 aagttatcctttctgctcttattcaacacagtgctcgatgtcttaacaataacacactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttatcctttctgctcttattcaacacagtgctcgatgtcttaacaataacacactaa 500

                                                                       
Query: 301 gagggaatacaaacaacagaagccaccagattatagccatttgctaactatatgatcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagggaatacaaacaacagaagccaccagattatagccatttgctaactatatgatcata 560

                                                                       
Query: 361 tatctaaagggctccaaagacatcattagatcagataaacattttcagtaatgtaacagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctaaagggctccaaagacatcattagatcagataaacattttcagtaatgtaacagt 620

                                                                       
Query: 421 ataaaaaaatcctaatacataagtcttctatatatcaaactcactataaaacaatcaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaaaaaatcctaatacataagtcttctatatatcaaactcactataaaacaatcaaca 680

                                                     
Query: 481 aaactctaggagtaaaactatcaaggttgtgaaagacctata 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactctaggagtaaaactatcaaggttgtgaaagacctata 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)