BAC Information

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BAC

Clone NameMSMg01-543J16
Chromosome11 (Build37)
Map Location 73,857,738 - 73,858,308
singlet/doubletsinglet
Overlap geneOlfr139
Upstream gene1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398
Downstream geneOlfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543J16.T7 (MSMg01no543_j16.b1)MSMg01-543J16.TJ (MSMg01no543_j16.g1)
ACCAG609100AG609101
length768757
length of high quality
(start - end)		633 (46 - 678)571 (75 - 645)
definitionCHROMAT_FILE: MSMg01no543_j16.b1 PHD_FILE: MSMg01no543_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:02 2005CHROMAT_FILE: MSMg01no543_j16.g1 PHD_FILE: MSMg01no543_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAGAATAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAACATTGT
ACTTAAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAGGAAGAATTCAAAATATGACTTTTGCAGATGATATGA
TAGTATATATAAGTGACCTTAAAAATTCCACCAGAGAACTCCTAAGCCTG
ATAAACAGCTTCAATGAAGTAGCTGGACGTAAAATTAACTCTAACAAGTC
AATGGCCTTTATGTACACAAAGGATAGAGGATGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATATTCACAAATAATATAAAATATCTTGGCGTGAC
TCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGA
AGAAAGAAAATTTTTTCCCATTTTTTATTAGGTATTTAGCTCATTTACAT
TTCCAATGTTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCT
GCCCACCCACTTCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGTGGCAT
ATAAAGTTTGCAAGTTCAATGGGCCTCTCTTTCCGTGATGGCCCACTATG
CCATCTTTTGAAAAAATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCAACTGTGCACTTGAGCTTCCAG
TATGAGAATGCCAAGGACATATGTAAGGATGGCAGGACATTTTAATAGCC
TTGTCCTGTCTTCTCACACTGGATACCTCTTTCCTGTCAGCACCCTCTTC
AGGGCACCCTGTACATCTGGGTTCCGGAGGCTGTAGATGAGTGGGTTTAA
CATAGGGCTGAGGATAGTATTGAGGATCCCAATGCCCTTGTCCTTGTCTG
AGGCTGAGACAGAACCCAGACGCATGTAACTGAAGAAGCCAGTTCCATAA
AAGATACAGACCACAGTGAGGTGGGAGCCGCATGTGGAAAATGCCTTCTT
CCTCCCCTCTGTGGAGCGGATCCGTAGTACTGCAGCTGCAACGTGGGCAT
AGGACACTGAGATAAGTATCATGGGGACTACTCCCATGAAAGTGGCTCCC
ACAAAAAGCAGTTGCCCATTGAGGTAGATGCTGGAGCAGGAGAGCTGGAA
AAGAGGTGGAAGGTCACAGTAGAAGTGGTTGACCACATTAGGGCCACAGA
AATCCAGCACAGACACTGCCACTGTGTGAGTCAGAGCATTAATGAAGGAG
ACAGTACAGCATATACCCACCAGTGTGCCCTGCACTTCACGGCTCATGCG
GGTGCTGTAAGTGAGGGGCTGGCAGATGGCCAGGTTAGCGGCATAGGCCA
TGGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_j16.g1 MSMg01no543_j16.g1 CHROMAT_FILE:
MSMg01no543_j16.g1 PHD_FILE: MSMg01no543_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:02 2005
         (571 letters)



>mm_chr11_73857538_73858508
          Length = 971

 Score = 1104 bits (571), Expect = 0.0
 Identities = 571/571 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaactgtgcacttgagcttccagtatgagaatgccaaggacatatgtaaggatggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaactgtgcacttgagcttccagtatgagaatgccaaggacatatgtaaggatggca 260

                                                                       
Query: 61  ggacattttaatagccttgtcctgtcttctcacactggatacctctttcctgtcagcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacattttaatagccttgtcctgtcttctcacactggatacctctttcctgtcagcacc 320

                                                                       
Query: 121 ctcttcagggcaccctgtacatctgggttccggaggctgtagatgagtgggtttaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttcagggcaccctgtacatctgggttccggaggctgtagatgagtgggtttaacata 380

                                                                       
Query: 181 gggctgaggatagtattgaggatcccaatgcccttgtccttgtctgaggctgagacagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctgaggatagtattgaggatcccaatgcccttgtccttgtctgaggctgagacagaa 440

                                                                       
Query: 241 cccagacgcatgtaactgaagaagccagttccataaaagatacagaccacagtgaggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagacgcatgtaactgaagaagccagttccataaaagatacagaccacagtgaggtgg 500

                                                                       
Query: 301 gagccgcatgtggaaaatgccttcttcctcccctctgtggagcggatccgtagtactgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagccgcatgtggaaaatgccttcttcctcccctctgtggagcggatccgtagtactgca 560

                                                                       
Query: 361 gctgcaacgtgggcataggacactgagataagtatcatggggactactcccatgaaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgcaacgtgggcataggacactgagataagtatcatggggactactcccatgaaagtg 620

                                                                       
Query: 421 gctcccacaaaaagcagttgcccattgaggtagatgctggagcaggagagctggaaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcccacaaaaagcagttgcccattgaggtagatgctggagcaggagagctggaaaaga 680

                                                                       
Query: 481 ggtggaaggtcacagtagaagtggttgaccacattagggccacagaaatccagcacagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtggaaggtcacagtagaagtggttgaccacattagggccacagaaatccagcacagac 740

                                          
Query: 541 actgccactgtgtgagtcagagcattaatga 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 actgccactgtgtgagtcagagcattaatga 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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