BAC Information

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BAC

Clone NameMSMg01-543M11
Chromosome11 (Build37)
Map Location 85,474,666 - 85,475,083
singlet/doubletsinglet
Overlap geneBcas3
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543M11.T7 (MSMg01no543_m11.b1)MSMg01-543M11.TJ (MSMg01no543_m11.g1)
ACCAG609234AG609235
length778768
length of high quality
(start - end)
101 (116 - 216)418 (79 - 496)
definitionCHROMAT_FILE: MSMg01no543_m11.b1 PHD_FILE: MSMg01no543_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:15 2005CHROMAT_FILE: MSMg01no543_m11.g1 PHD_FILE: MSMg01no543_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACTTATAATTTGTGGTCGTTTATACAACTCATTTTTTCGAGAGGTACC
GCGGAATTCTAAAGGTTTCATCTCCACATAAAAACCATCATGGTTTCACA
CCAGCCCAACCACCTTCCCAAGTCTCAACATGTTCTGACAATTGCTGAGA
ACTTGGTAATTTTTGGATATAAAATTTCTTCCTGCTGCTCATAAAGGACA
TCCTGCTTCCTCTGATTAGTAGCTTCTCTGTTGGTACTGGTGTGATATTA
TAGAAATAATGTGCTTTATTTTAATCATTTTACTTTATAACTAATATCCT
TTTCCCTATTCTTATTACTTAAGAATAGTACTGGTCGTCCCGTTAATATC
TTATTCACATACTTAACCACTCTTATTTCTATCCTTTACTTTTTTATCTT
CCAGGAATGCTTTTAGTCACAACAGATACTCTTGGTCATGACTTTTCATG
CCTTCCAAATCCTGACTCATTCTTGTTCATCATCACTGCGTGCTGTCTTT
CATCTGTATTCACTTCACTCGGTAAAGACCGAAGCCAAACTTTACTGTGT
TCTCTCCCTGTATACGGATTTGACTTCTTGGTGCACCAATGGCACTTTAA
AGCAATTGGAATATTCATACACCCTTTTCACAATATTTTTTTTTGACCAA
ACATATTTTTTTCTGTTTTATTTGTTAAGCCCCATTCCAATTGTGGTAAA
TAACCCCTATCCCCCCCTATCGACCCCACTAATTGATATAACCCCACTCC
TCTTTTGCTTATTTGTTTTCCTTTCCGC
CCCGATGATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGTTCCAAGGTTTCATAAG
AAATAAGGTGAAAAAAGCCAAGGTTATAGGCAAGGCAGGCTCTGAAAATG
TGAGGACATCTCAAACTGTCAGCAAGGTGTTGCCCAAGAAAGAGACTCTG
TGGAGGAGAGCTTCCATATAAATCCAGGCATCCACAGATCTCAGAGCATT
TGTTCATCCCTTGAGCATGGATGAAATGTTGAGATATTTTCAGTGTGTGA
ACAAGACTAACAGGGACACTCATGTACTAATTCATATACATGCAGATACT
TATCCTGCAAGAAAACACAAACTATTTTGTTGGTGGTGGTGGTATTTTTT
CAGAGATGAGGACCAAACCCAGGGCCTTGTGCTTGCTAGGTAAGCTCTCT
ACCACTGATCCCCAATCCAACACAAACTATTTTTAAAGGAGATATGCCAT
TCAAAACCTCATAGATTCTCCCCACCTTACCCACGCTTGGTGCTGTCATG
TTCGGATTTGAGCCCCCCCAGTGGCTTCTGGTGTCATTTGTCCCTATTTT
CACGTGACAGACCACCACTTTCCTTGTGATCTTAAAATCTCTCTTGGTGA
TTGGTTGGGTCTTCACCGGAGTTTTATAACTTCCTTTTTCACAACTGCTT
ACAATTTTGTTCAATGAATAATGTTCCCCTTCTTGGTCCTCTGGTTTTAA
GGGTGCTCATACCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_m11.g1 MSMg01no543_m11.g1 CHROMAT_FILE:
MSMg01no543_m11.g1 PHD_FILE: MSMg01no543_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:15 2005
         (418 letters)



>mm_chr11_85474568_85475385
          Length = 818

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagttccaaggtttcataagaaataaggtgaaaaaagccaaggttataggcaaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatagttccaaggtttcataagaaataaggtgaaaaaagccaaggttataggcaaggcag 457

                                                                       
Query: 61  gctctgaaaatgtgaggacatctcaaactgtcagcaaggtgttgcccaagaaagagactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctctgaaaatgtgaggacatctcaaactgtcagcaaggtgttgcccaagaaagagactc 397

                                                                       
Query: 121 tgtggaggagagcttccatataaatccaggcatccacagatctcagagcatttgttcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 396 tgtggaggagagcttccatataaatccaggcatccacagatctcagagcgtttgttcatc 337

                                                                       
Query: 181 ccttgagcatggatgaaatgttgagatattttcagtgtgtgaacaagactaacagggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 336 ccttgagcatggatgaaatgttgagatattttcagtgtgtgaacaaggctaacagggaca 277

                                                                       
Query: 241 ctcatgtactaattcatatacatgcagatacttatcctgcaagaaaacacaaactatttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctcatgtacaaattcatatacatgcagatacttatcctgcaagaaaacacaaactatttt 217

                                                                       
Query: 301 gttggtggtggtggtattttttcagagatgaggaccaaacccagggccttgtgcttgcta 360
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 216 gttgttggtggtggtattttttcagagatgaggaccaaacccaaggccttgtgcttgcta 157

                                                                     
Query: 361 ggtaagctctctaccactgatccccaatccaacacaaactatttttaaaggagatatg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ggtaagctctctaccactgatccccaatccaacacaaactatttttaaaggagatatg 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)