BAC Information

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BAC

Clone NameMSMg01-544C11
Chromosome11 (Build37)
Map Location 116,435,742 - 116,436,135
singlet/doubletsinglet
Overlap geneUbe2o
Upstream geneNup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1
Downstream geneAanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544C11.T7 (MSMg01no544_c11.b1)MSMg01-544C11.TJ (MSMg01no544_c11.g1)
ACCAG609519AG609520
length803756
length of high quality
(start - end)		354 (48 - 401)394 (83 - 476)
definitionCHROMAT_FILE: MSMg01no544_c11.b1 PHD_FILE: MSMg01no544_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:43 2005CHROMAT_FILE: MSMg01no544_c11.g1 PHD_FILE: MSMg01no544_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCCG
CGGAATTCCAGAAATTTCCCGTTAAACTGAGAAACCCTATCTGTTTTTGT
TGTTGTTGCTGTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCTTGCTGTC
CTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCTGCCT
GCCTCTGCCTCCCGAGTGCTGGGATTAAAGCACTGACCAGAGAAACCTTG
TTTTGAAAAACAAAAGAATAAATAAATAAAAATAAAATTAAAAATTGGTG
GGTTTTTTAAAATGTTGTTTGATTTGCTGCCCTCACCCAATTTAGTGTGT
GTGTATCTTTGTGTATGGTGGGTGTGGTTGTGTGTATATGGTAGGTGTGT
GGATTATTCTTAATTTTCCACCACTCTCTTTTTATTTTTTTGTTTTATCT
CGCACTATCATTTCTCTCCAACATTATATTTCTCTTATTATATTCACGAC
ATTCTCTTATTTACAGTTGATTTGAGTTTCTTTTCATATTTTTTCTTACC
GAACATTTTCACCTTTTTACACATATTTTTATTATTTTCCTCTCTTTTTT
AGTTACGATCTTTTTTTTACACTTCATATATTCTTTTTTTTTTGTTTTCT
ATATTTTCTTTTTTGCCTTTTTGATTTCTCTGAGACTTTAGTACGCTAGT
TTTTTCTCATTCTCTGTCACCAACTACTCACACTCATTACTCTAATCAAC
TCTATATCCACTTATTTTTTATTTTTCATATGTCCTCTCTCTATCTTTTC
TCT

TTGTGACTAATAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGGCCCAATGTTGT
GTAAAATAATAAAAGAGAAAGTTCTTGATCAAACAAAAATGAGAAAGGAA
AAAGCAAGGCCATCAATGAAGCAGGGAAGGCACGAAACACCTTGCATGTC
CTGAAGCAGAAAACAGACCACAGGCCAGAGGGAGGAAGGGACTGAGGCAG
AGCTCAGGCTTCCCAAGGAATCGCTCTTGGCCCTGATTCATGAGTCAGCA
TTCTCAGCAGCAGGAGACAGCAGGTCAGGCTGGAGTCCCACTATTGACAG
TTTTCAGGGATACAGAAGCCCTCTTGCTTCTAGCAGTGGAAGGCGGCCCT
TGGTATGTCGGTGCTGGACTGAGGCAGGCTAGTGCTCTATTCACTCAACA
TTCTAGGCAATCAAAGGTTCCCCAGAAATAGTGTTTTTGAACGCCAAGGT
CAGTAACCGCATCTTGATCAGACAGTTGCCATGAGCACAGAGTACAGCAC
TAAGTGCCTGGGGCACAACAACCGTGATGGGTTTGAGCTGTGATCCTAGG
ACAATGCATTCATTCCGAACCCTTATGATTCATCTAATTAGCTCCTCTCT
GGGAACTTTCATAAAGAAAGCCTTCCAGCCCACGTGGTGAAAACGCAACT
TTTAATCAATAGCTTTTTTGGTGAAGGCAGAGGTCCCAGTCTGGGTCCTG
CTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_c11.g1 MSMg01no544_c11.g1 CHROMAT_FILE:
MSMg01no544_c11.g1 PHD_FILE: MSMg01no544_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:43 2005
         (394 letters)



>mm_chr11_116435542_116436335
          Length = 794

 Score =  739 bits (382), Expect = 0.0
 Identities = 391/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaggcccaatgttgtgtaaaataataaaagagaaagttcttgatcaaacaaaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaggcccaatgttgtgtaaaataataaaagagaaagttcttgatcaaacaaaaatga 260

                                                                       
Query: 61  gaaaggaaaaagcaaggccatcaatgaagcagggaaggcacgaaacaccttgcatgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggaaaaagcaaggccatcaatgaagcagggaaggcacgaaacaccttgcatgtcct 320

                                                                       
Query: 121 gaagcagaaaacagaccacaggccagagggaggaagggactgaggcagagctcaggcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcagaaaacagaccacaggccagagggaggaagggactgaggcagagctcaggcttc 380

                                                                       
Query: 181 ccaaggaatcgctcttggccctgattcatgagtcagcattctcagcagcaggagacagca 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 381 ccaaggaatcgctcttggccctgattcatgagtcagcattcccagcagcaggggacagca 440

                                                                       
Query: 241 ggtcaggctggagtcccactattgacagttttcagggatacagaagccctcttgcttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcaggctggagtcccactattgacagttttcagggatacagaagccctcttgcttcta 500

                                                                       
Query: 301 gcagtggaaggcggcccttggtatgtcggtgctggactgaggcaggctagtgctctattc 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtggaaggcggcccttggtaggtcggtgctggactgaggcaggctagtgctctattc 560

                                             
Query: 361 actcaacattctaggcaatcaaaggttccccaga 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 actcaacattctaggcaatcaaaggttccccaga 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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