Query= MSMg01no544_g09.b1 MSMg01no544_g09.b1 CHROMAT_FILE:
MSMg01no544_g09.b1 PHD_FILE: MSMg01no544_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:03 2005
(594 letters)
>mm_chr11_12285420_12286413
Length = 994
Score = 1027 bits (531), Expect = 0.0
Identities = 576/591 (97%)
Strand = Plus / Minus
Query: 4 ggaattcttgtgttctaagataccatgcctttagttgaaataggccatatcatattgtct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggaattcttgtgttctaagataccatgcctttagttgaaataggccatatcatattgtct 735
Query: 64 ttgaaatagtgtaaaaagttatttttcaagcaggattcctccttgtagccattgtcccat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttgaaatagtgtaaaaagttatttttcaagcaggattcctccttgtagccattgtcccat 675
Query: 124 atataggacaatcttcacattagcatcaaaggaggtgtttggatttaagaccgttccctt 183
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 674 atataggacaatcttcacattaacatcaaaggaggtgtttggatttgagaccgttccctt 615
Query: 184 gtggcatttccccaggcccagctcagagactcggaatcttaagagtttctgtgtatgttt 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 614 gtggcatttccccaggcccagctcagagactcggaaccttaagagtttctgtgtatgttt 555
Query: 244 attttatagaacaatgactacattctctacacatctcccacaaaaccttataatgtaagc 303
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 554 attttctagaacagtgactacattctctacacatctcccacaaaaccttataatgtcagc 495
Query: 304 cgtatagtatactattatagtttaaaactgattttacaatgcatgccatcctaaccaata 363
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 494 cgtatattatactatcatagtttaaaactgattttacaatgcatgccatcctaaccagta 435
Query: 364 aatgtataattatgttttatatatttttctagttgatacttactgctttctcttctctta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aatgtataattatgttttatatatttttctagttgatacttactgctttctcttctctta 375
Query: 424 gattgtgacatctggacaataattcacaaattttgcttgacaagcacaaggaaaggtgga 483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gattgtggcatctggacaataattcacaaattttgcttgacaagcacaaggaaaggtgga 315
Query: 484 gttcctcctagaaagtaaaaatgtttctggaaaatgctttcaagcgcatatactgtgctc 543
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 314 gttcctcctagaaagtaaaaatgtttctggaaaatgctttcaagtgaatatactgtgctc 255
Query: 544 tctctgccttcagtaccctttcccctatagagtagaagttatcaccatgta 594
||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct: 254 tctctgccttcagtaccttttcccctatagagcagaagttatcgccatgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_g09.g1 MSMg01no544_g09.g1 CHROMAT_FILE:
MSMg01no544_g09.g1 PHD_FILE: MSMg01no544_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:03 2005
(565 letters)
>mm_chr11_12126670_12127632
Length = 963
Score = 1042 bits (539), Expect = 0.0
Identities = 558/565 (98%), Gaps = 2/565 (0%)
Strand = Plus / Plus
Query: 1 tagttggatctgaaggggaagcactggaagagagtagacagtggttctccacctgtttgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tagttggatctgaaggggaagcactggaagagagtagacagtggttctccacctgtgtgt 260
Query: 61 ggcaacccctttgggagttgcatcagatatcctgcatatcagatatttacattacaactc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaccccttcgggagttgcatcagatatcctgcatatcagatatttacattacaactc 320
Query: 121 ataacagtagcaaaattacagttatgaagtagcaatgagataattttatgattggggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacagtagcaaaattacagttatgaagtagcaatgagataattttatgattggggcca 380
Query: 181 taacaacatgaggaactgtgttagagggttgcaacattagaaaggttgagaactactgga 240
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaacatgaggaactgtgttagagtgttgcaacattagaaaggttgagaactactgga 440
Query: 241 ctagagactaagaaattgaagtattttctgtctagccaggcagaggcacacagcggctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagactaagaaattgaagtattttctgtctagccaggcagaggcacacagcggctga 500
Query: 301 ctttctgtcactcaggtctgtttgcagagttgctgagccttatcaggctgtagtgactac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttctgtcactcaggtctgtttgcagagttgctgagccttatcaggctgtagtgactac 560
Query: 361 cccttcccttccctttcgatcacaggcccacaactagccaggattgttatactcatctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccttcccttccctttcgatcacaggcccacaactagccaggattgttatactcatctct 620
Query: 421 ctgagaacaggtctggaattagtttcacacataaatagaggaatttctggagcttggtga 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagaacaggtctggaattagtttcgcacataaatagaggaatttctggagcttggtga 680
Query: 481 acatgccataaaacctgtggccaaggctcagagctcaagtctttttgtcacatgaacact 540
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 acatgccataaaacctgtggccaaggctcagagctcaagtcttt--gtcacatgaacact 738
Query: 541 cttaccacggtcccaaaaggcataa 565
|||||||||||||||||||||||||
Sbjct: 739 cttaccacggtcccaaaaggcataa 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space: 528915
Effective search space used: 528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|