BAC Information

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BAC

Clone NameMSMg01-544G09
Chromosome11 (Build37)
Map Location 12,126,870 - 12,286,213
singlet/doubletdoublet
Overlap geneCobl
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544G09.T7 (MSMg01no544_g09.b1)MSMg01-544G09.TJ (MSMg01no544_g09.g1)
ACCAG609707AG609708
length744744
length of high quality
(start - end)
594 (50 - 643)565 (78 - 642)
definitionCHROMAT_FILE: MSMg01no544_g09.b1 PHD_FILE: MSMg01no544_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:03 2005CHROMAT_FILE: MSMg01no544_g09.g1 PHD_FILE: MSMg01no544_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,285,623 - 12,286,213)(12,126,870 - 12,127,432)
sequence
GAGACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGTGTTCTAAGATACCATGCCTTTAGTTGAAATAGGCCAT
ATCATATTGTCTTTGAAATAGTGTAAAAAGTTATTTTTCAAGCAGGATTC
CTCCTTGTAGCCATTGTCCCATATATAGGACAATCTTCACATTAGCATCA
AAGGAGGTGTTTGGATTTAAGACCGTTCCCTTGTGGCATTTCCCCAGGCC
CAGCTCAGAGACTCGGAATCTTAAGAGTTTCTGTGTATGTTTATTTTATA
GAACAATGACTACATTCTCTACACATCTCCCACAAAACCTTATAATGTAA
GCCGTATAGTATACTATTATAGTTTAAAACTGATTTTACAATGCATGCCA
TCCTAACCAATAAATGTATAATTATGTTTTATATATTTTTCTAGTTGATA
CTTACTGCTTTCTCTTCTCTTAGATTGTGACATCTGGACAATAATTCACA
AATTTTGCTTGACAAGCACAAGGAAAGGTGGAGTTCCTCCTAGAAAGTAA
AAATGTTTCTGGAAAATGCTTTCAAGCGCATATACTGTGCTCTCTCTGCC
TTCAGTACCCTTTCCCCTATAGAGTAGAAGTTATCACCATGTAATTCTGA
AAGATTCCTACCATGACTACTGAGAGCCTTATCAATTATTCAGATAACAT
TCTCTTTCTAAGCAGGAAAGCTTAGAGTCTGGAAGAGCCAGCCT
GAGGCAGTGTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTTGGATCTGAAGGGGAAGCA
CTGGAAGAGAGTAGACAGTGGTTCTCCACCTGTTTGTGGCAACCCCTTTG
GGAGTTGCATCAGATATCCTGCATATCAGATATTTACATTACAACTCATA
ACAGTAGCAAAATTACAGTTATGAAGTAGCAATGAGATAATTTTATGATT
GGGGCCATAACAACATGAGGAACTGTGTTAGAGGGTTGCAACATTAGAAA
GGTTGAGAACTACTGGACTAGAGACTAAGAAATTGAAGTATTTTCTGTCT
AGCCAGGCAGAGGCACACAGCGGCTGACTTTCTGTCACTCAGGTCTGTTT
GCAGAGTTGCTGAGCCTTATCAGGCTGTAGTGACTACCCCTTCCCTTCCC
TTTCGATCACAGGCCCACAACTAGCCAGGATTGTTATACTCATCTCTCTG
AGAACAGGTCTGGAATTAGTTTCACACATAAATAGAGGAATTTCTGGAGC
TTGGTGAACATGCCATAAAACCTGTGGCCAAGGCTCAGAGCTCAAGTCTT
TTTGTCACATGAACACTCTTACCACGGTCCCAAAAGGCATAAAGCTGAGA
GCTGAGCATGCCTGCATGGCTGCCTTCACTTTCCCATTGNAGCAGGCTGG
TAGGTGCTGTGAGTATTCACTCACCACCTTCTGCTCTCCAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_g09.b1 MSMg01no544_g09.b1 CHROMAT_FILE:
MSMg01no544_g09.b1 PHD_FILE: MSMg01no544_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:03 2005
         (594 letters)



>mm_chr11_12285420_12286413
          Length = 994

 Score = 1027 bits (531), Expect = 0.0
 Identities = 576/591 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgtgttctaagataccatgcctttagttgaaataggccatatcatattgtct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggaattcttgtgttctaagataccatgcctttagttgaaataggccatatcatattgtct 735

                                                                       
Query: 64  ttgaaatagtgtaaaaagttatttttcaagcaggattcctccttgtagccattgtcccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttgaaatagtgtaaaaagttatttttcaagcaggattcctccttgtagccattgtcccat 675

                                                                       
Query: 124 atataggacaatcttcacattagcatcaaaggaggtgtttggatttaagaccgttccctt 183
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 674 atataggacaatcttcacattaacatcaaaggaggtgtttggatttgagaccgttccctt 615

                                                                       
Query: 184 gtggcatttccccaggcccagctcagagactcggaatcttaagagtttctgtgtatgttt 243
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 614 gtggcatttccccaggcccagctcagagactcggaaccttaagagtttctgtgtatgttt 555

                                                                       
Query: 244 attttatagaacaatgactacattctctacacatctcccacaaaaccttataatgtaagc 303
           ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 554 attttctagaacagtgactacattctctacacatctcccacaaaaccttataatgtcagc 495

                                                                       
Query: 304 cgtatagtatactattatagtttaaaactgattttacaatgcatgccatcctaaccaata 363
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 494 cgtatattatactatcatagtttaaaactgattttacaatgcatgccatcctaaccagta 435

                                                                       
Query: 364 aatgtataattatgttttatatatttttctagttgatacttactgctttctcttctctta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aatgtataattatgttttatatatttttctagttgatacttactgctttctcttctctta 375

                                                                       
Query: 424 gattgtgacatctggacaataattcacaaattttgcttgacaagcacaaggaaaggtgga 483
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gattgtggcatctggacaataattcacaaattttgcttgacaagcacaaggaaaggtgga 315

                                                                       
Query: 484 gttcctcctagaaagtaaaaatgtttctggaaaatgctttcaagcgcatatactgtgctc 543
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 314 gttcctcctagaaagtaaaaatgtttctggaaaatgctttcaagtgaatatactgtgctc 255

                                                              
Query: 544 tctctgccttcagtaccctttcccctatagagtagaagttatcaccatgta 594
           ||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct: 254 tctctgccttcagtaccttttcccctatagagcagaagttatcgccatgta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no544_g09.g1 MSMg01no544_g09.g1 CHROMAT_FILE:
MSMg01no544_g09.g1 PHD_FILE: MSMg01no544_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:03 2005
         (565 letters)



>mm_chr11_12126670_12127632
          Length = 963

 Score = 1042 bits (539), Expect = 0.0
 Identities = 558/565 (98%), Gaps = 2/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagttggatctgaaggggaagcactggaagagagtagacagtggttctccacctgtttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tagttggatctgaaggggaagcactggaagagagtagacagtggttctccacctgtgtgt 260

                                                                       
Query: 61  ggcaacccctttgggagttgcatcagatatcctgcatatcagatatttacattacaactc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaccccttcgggagttgcatcagatatcctgcatatcagatatttacattacaactc 320

                                                                       
Query: 121 ataacagtagcaaaattacagttatgaagtagcaatgagataattttatgattggggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataacagtagcaaaattacagttatgaagtagcaatgagataattttatgattggggcca 380

                                                                       
Query: 181 taacaacatgaggaactgtgttagagggttgcaacattagaaaggttgagaactactgga 240
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaacatgaggaactgtgttagagtgttgcaacattagaaaggttgagaactactgga 440

                                                                       
Query: 241 ctagagactaagaaattgaagtattttctgtctagccaggcagaggcacacagcggctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagactaagaaattgaagtattttctgtctagccaggcagaggcacacagcggctga 500

                                                                       
Query: 301 ctttctgtcactcaggtctgtttgcagagttgctgagccttatcaggctgtagtgactac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttctgtcactcaggtctgtttgcagagttgctgagccttatcaggctgtagtgactac 560

                                                                       
Query: 361 cccttcccttccctttcgatcacaggcccacaactagccaggattgttatactcatctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccttcccttccctttcgatcacaggcccacaactagccaggattgttatactcatctct 620

                                                                       
Query: 421 ctgagaacaggtctggaattagtttcacacataaatagaggaatttctggagcttggtga 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagaacaggtctggaattagtttcgcacataaatagaggaatttctggagcttggtga 680

                                                                       
Query: 481 acatgccataaaacctgtggccaaggctcagagctcaagtctttttgtcacatgaacact 540
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 681 acatgccataaaacctgtggccaaggctcagagctcaagtcttt--gtcacatgaacact 738

                                    
Query: 541 cttaccacggtcccaaaaggcataa 565
           |||||||||||||||||||||||||
Sbjct: 739 cttaccacggtcccaaaaggcataa 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space:   528915
Effective search space used:   528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)