BAC Information

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BAC

Clone NameMSMg01-544I11
Chromosome11 (Build37)
Map Location 75,734,262 - 75,914,665
singlet/doubletdoublet
Overlap gene1700016K19Rik, 1500005K14Rik, Vps53
Upstream geneSrr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al
Downstream geneLOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544I11.T7 (MSMg01no544_i11.b1)MSMg01-544I11.TJ (MSMg01no544_i11.g1)
ACCAG609806AG609807
length751746
length of high quality
(start - end)
407 (46 - 452)493 (78 - 570)
definitionCHROMAT_FILE: MSMg01no544_i11.b1 PHD_FILE: MSMg01no544_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:13 2005CHROMAT_FILE: MSMg01no544_i11.g1 PHD_FILE: MSMg01no544_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,734,262 - 75,734,674)(75,914,207 - 75,914,665)
sequence
GATGTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTGTAGCTTTTCTCTATCCGACATTTGTACTGACTCCATCTTG
CCATCTGTCTCCTCCAGGTTCTTTGTCTCTGCTGTCCCTATGAAGACATC
TCTGGAGATGACCTCAGTGTCCATGGACTAGCATAGTACCTGAACATAAT
GAGTGTTAGGCACACACACAAAGACCCAATACACTGCAGCCCACAAAGCA
AGGCCTGGCCAGTCACCTCACCTCCCATCCATCCGGTCCTGTGTGTTTGT
ATGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGCGTGTGTCTGTGTCT
GTGTGTCTCCTCACCCCACCCCCTGGCATGCTTAGACCCAGTTCTGAACT
GGTCTCTCTTGTCCTGCCTCTGGCCACATGGCAAGGTGGTTCACACCAAC
TAGAAACGAATAAAGGACCCAGACGCTTGAAGAATGATCAATAATACATC
CAGGTACAAGGTCACAGTTAATGTCAAAATGACTGATGACCTGAAAAAAG
GATCACAGAAAGGTTAGCTATACAAGAAAAACCAAACTCAGTCAGATGTG
TGTGGGCGCGCTTGCGTGTATGCCCGTGCGTGTGTGGATGGTACGACTTT
TGACACTCGCTGGTTAAAGCGTATCGTGTCCTTTTAGAATTTATTAGTGA
CCTTTTTTCTCATCTAATTGAATAAAAATTTGGCCTTTTATTAAATAATA
N
GGAGACGATGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAAGCCATTAAATGTGTCTG
TTTCATTGATTAAGTAATTGTAATAACACAGGTACCTCACATTTAAGGCA
CTTTATAATTTCAAAATCTTTACACGCTTTCTTTCATTTCACTTTCACTA
TGTGTCCCTCTCGTTTACAGGTGATGAAAGTACAGCTCAGAGAGGCTCAC
CAGCTCGATCACACAGGGCTATAAGTTTGGAAGTGGAGGGGTGGGACTAG
CAGCCAGGTCTAGCAGATGGAAACTTGAATTCCTTTCCTAGCACCTCCCC
CCCATACACACTTCATGTCTTATTAAAAAGTGAAGACCATAGAAGTGAAG
TTTATGGGCAAAAGTAATCAGGAAGAACTGAGAGTTGCTGTGAGTCTATC
CCAGAAAAGTGGGGCTAGCTGTAGCTTGTTTAAAGCTGTGGTATTATTAG
GTAGCACAGACAAGGGGATATTGCTTCTGACCCCAGTGCAGTTCTCAGAG
TGGGAGCAAGGACTCAGATTGGAGGGGCTTCAATTTTTTTGGTAAATTCC
ACTGGGCCACCTGCTTAGTAGAAACATGCCTTGTGCAGTCATGCTTTGTA
TGGGGCCTTCCTGCCTCCCCAAGCTATAAACTGCCTTTGCCTTGATTGAT
AAGGGCCATGCAGTTTGAGCACTCAATGCTCTGTGTTAGCTGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_i11.b1 MSMg01no544_i11.b1 CHROMAT_FILE:
MSMg01no544_i11.b1 PHD_FILE: MSMg01no544_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:13 2005
         (407 letters)



>mm_chr11_75734056_75734862
          Length = 807

 Score =  721 bits (373), Expect = 0.0
 Identities = 398/413 (96%), Gaps = 12/413 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattctgtagcttttctctatccgacatttgtactgactccatcttgccatctgtctc 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctgtagcttctctctatccgacatttgtactgactccatcttgccatctgtctc 266

                                                                       
Query: 67  ctccaggttctttgtctctgctgtccctatgaagacatctctggagatgacctcagtgtc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctccaggttctttgtctctgctgtccctatgaagacatctctggagatgacctcagtgtc 326

                                                                       
Query: 127 catggactagcatagtacctgaacataatgagtgttaggcacacacacaaagacccaata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catggactagcatagtacctgaacataatgagtgttaggcacacacacaaagacccaata 386

                                                                       
Query: 187 cactgcagcccacaaagcaaggcctggccagtcacctcacctcccatccatccggtcctg 246
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 387 cactgcagcccacaaagcaaggcctggccagtcacgtcacctcccatccatccggtcgtg 446

                                                                       
Query: 247 tgtgtttgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgt------ctgtgcgtgtgtctg 300
           |||||||||||||||||||||||||||||||||||||||      |||||||||||||||
Sbjct: 447 tgtgtttgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgcgtgtgtctg 506

                                                                       
Query: 301 tgtctgtgt------gtctcctcaccccaccccctggcatgcttagacccagttctgaac 354
           |||||||||      |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtctgtgtctgtgtgtctcctcaccccaccccctggcatgcttagacccagttctgaac 566

                                                                
Query: 355 tggtctctcttgtcctgcctctggccacatggcaaggtggttcacaccaacta 407
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggtctctcttgtcctgcctctggccacatggcaaggtggttcacaccaacta 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no544_i11.g1 MSMg01no544_i11.g1 CHROMAT_FILE:
MSMg01no544_i11.g1 PHD_FILE: MSMg01no544_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:13 2005
         (493 letters)



>mm_chr11_75913773_75914665
          Length = 893

 Score =  880 bits (455), Expect = 0.0
 Identities = 458/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 35  aagtaattgtaataacacaggtacctcacatttaaggcactttataatttcaaaatcttt 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aagtaattgtaataacacaggtacctcacatttaaggcactttataatttcaaaatcttt 834

                                                                       
Query: 95  acacgctttctttcatttcactttcactatgtgtccctctcgtttacaggtgatgaaagt 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 acacgctttctttcatttcactttcactatgtgtccctctcgtttacaggtgatgaaagt 774

                                                                       
Query: 155 acagctcagagaggctcaccagctcgatcacacagggctataagtttggaagtggagggg 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 acagctcagagaggctcaccagctcgatcacacagggctataagtttggaagtggagggg 714

                                                                       
Query: 215 tgggactagcagccaggtctagcagatggaaacttgaattcctttcctagcacctccccc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgggactagcagccaggtctagcagatggaaacttgaattcctttcctagcacctccccc 654

                                                                       
Query: 275 ccatacacacttcatgtcttattaaaaagtgaagaccatagaagtgaagtttatgggcaa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccatacacacttcatgtcttattaaaaagtgaagaccatagaagtgaagtttatgggcaa 594

                                                                       
Query: 335 aagtaatcaggaagaactgagagttgctgtgagtctatcccagaaaagtggggctagctg 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagtaatcaggaagaactgagagttgctgtgagtctatcccagaaaagtggggctagctg 534

                                                                       
Query: 395 tagcttgtttaaagctgtggtattattaggtagcacagacaaggggatattgcttctgac 454
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tagcttgtttaaagctgtagtattattaggtagcacagacaaggggatattgcttctgac 474

                                                  
Query: 455 cccagtgcagttctcagagtgggagcaaggactcagatt 493
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cccagtgcagttctcagagtgggagcaaggactcagatt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)