Query= MSMg01no544_j15.b1 MSMg01no544_j15.b1 CHROMAT_FILE:
MSMg01no544_j15.b1 PHD_FILE: MSMg01no544_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
(688 letters)
>mm_chr11_55705046_55706131
Length = 1086
Score = 1261 bits (652), Expect = 0.0
Identities = 676/684 (98%), Gaps = 2/684 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatcatttggcttggcagcaagtgcctttacccaccgagccatctctctggtc 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatcatcaggcttggcagcaagtgcctttacccaccgagccatctctctggtc 264
Query: 65 ttcactcaacccctcaatcaaacccagtcttgagattgtaattctccaagtcttgtatat 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ttcactcaacccctcaatcaaacccagtcttgagattgtaattctccaagtcttatatat 324
Query: 125 gacatctcttttatctttccatatgtcttgacctttaatcttctattctcttctggggag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacatctcttttatctttccatatgtcttgacctttaatcttctattctcttctggggag 384
Query: 185 ttttgcaagcatttctctagatcttgttgctatctgtaggatctcacagttgcctacagg 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttgcaagcatttctctagatctt-ttgctatctgtaggatctcacagttgcctacagg 443
Query: 245 atctgtgttctgcctccattctttcctcccttgatgattgatgtgtgcacagtagacctc 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 atctgtgttctgcctccattctttcctcccttaatgattgatgtgtgcacagtagacctc 503
Query: 305 actgtacactcctgagcagtgctaaatgcactgggctgtctctaagcttgccttttcttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actgtacactcctgagcagtgctaaatgcactgggctgtctctaagcttgccttttcttc 563
Query: 365 tgcttccatcttgattggggggggcatttattaattgtcttccatgttgccattcacaga 424
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcttccatcttga-tggggggagcatttattaattgtcttccatgttgccattcacaga 622
Query: 425 atgatgacaccttcagcttctcaggcaatccccagcattgcttgaattggttttaagaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atgatgacaccttcagcttctcaggcaatccccagcattgcttgaattggttttaagaac 682
Query: 485 ctttctattattcctccaggtttttagttggtacacagactctcccagcctggatgtggc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctttctattattcctccaggtttttagttggtacacagactctcccagcctggatgtggc 742
Query: 545 tatgggttggattgaggtttagcccagatctgttggttataagctaatatttgggaaaga 604
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tatggattggattgaggtttagcccagatctgttggttataagctaatatttgggaaaga 802
Query: 605 gtggagtgaatttagacttgggctaaagtcaccacagtcaatgcaaatttgtaattgatg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtggagtgaatttagacttgggctaaagtcaccacagtcaatgcaaatttgtaattgatg 862
Query: 665 tactctagatatacttatctacca 688
||||||||||||||||||||||||
Sbjct: 863 tactctagatatacttatctacca 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1086
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1076
Effective search space: 729528
Effective search space used: 729528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_j15.g1 MSMg01no544_j15.g1 CHROMAT_FILE:
MSMg01no544_j15.g1 PHD_FILE: MSMg01no544_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:19 2005
(416 letters)
>mm_chr11_55904562_55905377
Length = 816
Score = 739 bits (382), Expect = 0.0
Identities = 408/418 (97%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 1 cacacccctaagccccttaccccataaaagcccctggcttttgagcctcggggacgacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 742 cacacccctaagccccttaccccataaaagcccctggcttttgagcctcggggccgacat 683
Query: 61 ccgttatctcgtgtgtgggatgcatgtcggcccggagctc--cgtaattaaacgtcctca 118
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 682 ccgttatctcctgtgtgggatgaatgtcggcccggagctccgcgtaattaaacgtcctca 623
Query: 119 tgtaattacagcgagtgggtcttcgtgtttctttgggtgctctcacactcctgagactag 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtaattacagcgagtgggtcctcgtgtttctttgggtgctctcacactcctgagactag 563
Query: 179 agtgggggtccccgaaagggggtcttacagaataaataccctagtttctggccttcagct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agtgggggtccccgaaagggggtcttacagaataaataccctagtttctggccttcagct 503
Query: 239 tcaaatgccaccacaattctgtaacattcaatttttttctcaaaataaaacaatgaaagt 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcaaatgtcaccacaattctgtaacattcaatttttttctcaaaataaaacaatgaaagt 443
Query: 299 aaccagaaatttccctaattgcagagagagacagtcacacacacacacacacacacacac 358
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 aaccagaaatttccctaattgcagagagagacagt--cacacacacacacacacacacac 385
Query: 359 acacacacacacacacagggagaggaaaagggagagacagacagaggaaggaggacag 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 acacacacacacacacagggagagggaaagggagagacagacagaggaaggaggacag 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
