Query= MSMg01no545_f09.b1 MSMg01no545_f09.b1 CHROMAT_FILE:
MSMg01no545_f09.b1 PHD_FILE: MSMg01no545_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:16 2005
(605 letters)
>mm_chr11_36287372_36288376
Length = 1005
Score = 1162 bits (601), Expect = 0.0
Identities = 601/601 (100%)
Strand = Plus / Plus
Query: 5 gaattctatggtatacactgtggctttggcttggacatcctgaggcgtggctgcttctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatggtatacactgtggctttggcttggacatcctgaggcgtggctgcttctct 264
Query: 65 ttcagttgctaagactacggaccctgtcttgtttatcttttatccctgagcattgaacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcagttgctaagactacggaccctgtcttgtttatcttttatccctgagcattgaacat 324
Query: 125 aggatgtacccaaagtaggtactcaaaaatgtttattgaatcttgaataatgaatagtcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggatgtacccaaagtaggtactcaaaaatgtttattgaatcttgaataatgaatagtcc 384
Query: 185 ttgactgaagtactgttttactagaattacagaaggtttttcttgatgcgtctagtaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgactgaagtactgttttactagaattacagaaggtttttcttgatgcgtctagtaaag 444
Query: 245 tcaattagaaatcataactggcatttgtaacgggaggcagaatgggagaaaataagaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaattagaaatcataactggcatttgtaacgggaggcagaatgggagaaaataagaaaa 504
Query: 305 gcacacattgcttttggcagaaagtacctgagggccctagttaccctcagccccacatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcacacattgcttttggcagaaagtacctgagggccctagttaccctcagccccacatta 564
Query: 365 tcagcagtttagagatttgctaatgtgtccaaaatctccagagacttttttttcaagcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagcagtttagagatttgctaatgtgtccaaaatctccagagacttttttttcaagcag 624
Query: 425 gaaaattgtcaggagaggaattctgtctgccagtagaccacacaacctaatttcttcttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaaattgtcaggagaggaattctgtctgccagtagaccacacaacctaatttcttcttg 684
Query: 485 cttatttctcctttcaaggtgccttgtgaacactggcatctgaagaagcctcggcacagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttatttctcctttcaaggtgccttgtgaacactggcatctgaagaagcctcggcacagc 744
Query: 545 cctgcatcacccgcttttcatgcgatggttgttcttcaacagatgcacaagaatccatct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctgcatcacccgcttttcatgcgatggttgttcttcaacagatgcacaagaatccatct 804
Query: 605 c 605
|
Sbjct: 805 c 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_f09.g1 MSMg01no545_f09.g1 CHROMAT_FILE:
MSMg01no545_f09.g1 PHD_FILE: MSMg01no545_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:17 2005
(581 letters)
>mm_chr11_36462425_36463405
Length = 981
Score = 990 bits (512), Expect = 0.0
Identities = 560/586 (95%), Gaps = 18/586 (3%)
Strand = Plus / Minus
Query: 1 ttgtgacaggga-----ttttttttttttttttgagggacagcagggacaaggattgtga 55
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgtgacagggatttttttttttttttttttttgagggacagcagggacaaggattgtga 539
Query: 56 ggtggaagtgacgctcctagaatattataaagagagtcacctgaagaaaaaagcatgtca 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggtggaagtgacgctcctagaatattataaagagagtcacctgaagaaaaaagcatgtca 479
Query: 116 gacaaaggggttttagagtccctatgtgcaataccactctgccactgtcacagcttggtt 175
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gacgaaggggttttagagtccctatgtgcaataccactctgccactgtcacagcttggtt 419
Query: 176 gtcacttaataggtcatatggtttcttacattttactgactactttaggcagcaatatta 235
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 gtcacttaataggtcatacggtttcttatgttttactgactactttaggcagcaatatta 359
Query: 236 cctcgggttttatagatgagactacgtccagagtgtttctttaaattgtttaaagtcacc 295
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 358 cctcgagttttatagatgagactatgtccagagtgtttctttaaattgtttaaagtcacc 299
Query: 296 aattggcaaggaagtctatgttggctttggcatgcccctttccatttcttggacataaaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aattggcaaggaagtctatgttggctttggcatgcccctttccatttcttggacataaaa 239
Query: 356 taatgtctagtttccaaggaattcaaaggacactagaagagtgtgttttcagctaatagc 415
|||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct: 238 taatgtctagtttccaaggaattc------------aagagt-tgttttcagctcatagc 192
Query: 416 acagcatgaggactgggaatgaagttggccattgcccttgtgctcccttgtcttctttgc 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 acagcatgaggactgggaatgaagttggccattgcctttgtgctcccttgtcttctttgc 132
Query: 476 cactagtgatgtgatgcaggcaaaacccctgaccaacccaaactttgctgaggacagaac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cactagtgatgtgatgcaggcaaaacccctgaccaacccaaactttgctgaggacagaac 72
Query: 536 cctgccagtcagtggagaatgaataagaagttgtggaaatgagaag 581
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cctgccagtcagtggagaatgaataagaagttgtggaaatgagaag 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
