Query= MSMg01no545_g05.b1 MSMg01no545_g05.b1 CHROMAT_FILE:
MSMg01no545_g05.b1 PHD_FILE: MSMg01no545_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:20 2005
(700 letters)
>mm_chr11_5234817_5235916
Length = 1100
Score = 1328 bits (687), Expect = 0.0
Identities = 693/695 (99%), Gaps = 1/695 (0%)
Strand = Plus / Plus
Query: 6 aattcaacactgtgtgaagcacagaacagttatgtttcagctccagggtcttgtgagctg 65
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 207 aattcaacactg-gtgaagcacagaacagttctgtttcagctccagggtcttgtgagctg 265
Query: 66 tatgatctcagatcatgtggagaaccttactaggactcagtttcctcaccataacatggg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatgatctcagatcatgtggagaaccttactaggactcagtttcctcaccataacatggg 325
Query: 126 aatgtggacaagatgtcaatgtgacaagcaaaggcaactacagctcctagcaggcagtgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatgtggacaagatgtcaatgtgacaagcaaaggcaactacagctcctagcaggcagtgt 385
Query: 186 tcaggatgggtgcatacaccaggttctgagctaagtgctctgcttacatctcacagccct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcaggatgggtgcatacaccaggttctgagctaagtgctctgcttacatctcacagccct 445
Query: 246 acagcaatcagagaggcagtttttcacaaaggaacaagacatcaagaactaaagttgctt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acagcaatcagagaggcagtttttcacaaaggaacaagacatcaagaactaaagttgctt 505
Query: 306 ttctaaggtcactcaggcaaggcattctaacataaaatcctctaaatgactttacgttaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttctaaggtcactcaggcaaggcattctaacataaaatcctctaaatgactttacgttaa 565
Query: 366 cttccccataccatcttctgaagcatggacacaggcaggtccaagcctgctggatttact 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttccccataccatcttctgaagcatggacacaggcaggtccaagcctgctggatttact 625
Query: 426 gtatttcaaaatgctagcacagaattggtctatctggtgtttggggtttatctagcctgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtatttcaaaatgctagcacagaattggtctatctggtgtttggggtttatctagcctgg 685
Query: 486 aatttcggaattcagtccaagtgaattctgctagaaacatcatgagagtctctgtgaata 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aatttcggaattcagtccaagtgaattctgctagaaacatcatgagagtctctgtgaata 745
Query: 546 tgaagggatgaaatgcctgaggcataccgactcttgcactttgggaaggatttatgactc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgaagggatgaaatgcctgaggcataccgactcttgcactttgggaaggatttatgactc 805
Query: 606 ttctcaaagtaagctgcccccaaatgtcaattctactgttttactgtcacagggttaagt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttctcaaagtaagctgcccccaaatgtcaattctactgttttactgtcacagggttaagt 865
Query: 666 tctgtaatgagggcattaggggagatcctaacctt 700
|||||||||||||||||||||||||||||||||||
Sbjct: 866 tctgtaatgagggcattaggggagatcctaacctt 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_g05.g1 MSMg01no545_g05.g1 CHROMAT_FILE:
MSMg01no545_g05.g1 PHD_FILE: MSMg01no545_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:20 2005
(638 letters)
>mm_chr11_5379723_5380760
Length = 1038
Score = 667 bits (345), Expect = 0.0
Identities = 360/365 (98%), Gaps = 2/365 (0%)
Strand = Plus / Minus
Query: 275 gaagagggcatcagatccccttggactggagtcacaggtgcttgtgagctgcc-acgtgg 333
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct: 1038 gaagagggcatcagatcccctaggactggagtcacaggtgcttgtgagctgccaac-tgg 980
Query: 334 gtgctaggaattaaatccatgtcctctgcaagagcagcataaggttgttacccactgagc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gtgctaggaattaaatccatgtcctctgcaagagcagcataaggttgttacccactgagc 920
Query: 394 catctctccagctgtgcgcctggttttggtgctggcatggtacccagggctttgcacatg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 catctctccagctgtgcgcctggttttggtgctggcatggtacccagggctttgcacatg 860
Query: 454 ctcagtaagagcttctgagctcttccatattgcattccaatcctgggctggccttgggcc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ctcagtaagagcttctgagctcttccatattgcattccaatcctgggctggccttgggcc 800
Query: 514 ctgagagctgggatcccagctgtgcacccccacccccacctgcttattttattttgttac 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctgagagctgggatcccagctgtgcacccccacccccacctgcttattttattttgttac 740
Query: 574 agtttcagcaagataaccagaatagactggttctgctaacttttccaatactctttctct 633
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 739 agtttcagcaagataaccagaatagagtggttctgctaactttcccaatactctttctct 680
Query: 634 ccagt 638
|||||
Sbjct: 679 ccagt 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
