BAC Information

Click to search

BAC

Clone NameMSMg01-545O08
Chromosome11 (Build37)
Map Location 109,110,029 - 109,258,093
singlet/doubletdoublet
Overlap geneRgs9, 1700096J18Rik, Gna13
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985
Downstream gene9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O08.T7 (MSMg01no545_o08.b1)MSMg01-545O08.TJ (MSMg01no545_o08.g1)
ACCAG610848AG610849
length732729
length of high quality
(start - end)
692 (37 - 728)535 (66 - 600)
definitionCHROMAT_FILE: MSMg01no545_o08.b1 PHD_FILE: MSMg01no545_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:00 2005CHROMAT_FILE: MSMg01no545_o08.g1 PHD_FILE: MSMg01no545_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,110,029 - 109,110,716)(109,257,559 - 109,258,093)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCC
CATAGCCATAGGCTTACTTTTAGGGAAGATGGATCATTTTTTAAAAAAAC
TATTAATTTGGGAAGGTATAAAGGCTATCTGAAGATTCTTATGAGACCCT
GACCTGTAACCTAATGTTGGAAGTCAGCAGTGACAAAATATGGTTCATTG
GAACCTACGGTCAGTTTTCACGTTGCCTGTCATGTTTGACCTAAAGCAGA
CATTCTCTTACACACCTATCACTCGTGATTTAGCAAGACAAATCAGGGAC
ATACCCTCCAAGAGACACCGAAGACTTCACTGTGGACCTCATTAAGGCCT
GTTGGTAATACATGATCTGGAAAGAGAGACGGCTGTTAGAAGACAGCTGT
GATTGTTAGTCACGACTCGGGAATCACTTGACAGACAGACAGACAGACCT
CTGGGGATGTCTATGTGGGGATTTCTAGACTGGGTTGTGATGGGAGGCCC
CACCCTTATAGTGAACAGCACCAGGCCACAGGCCGGGCTCCAGGATTGAA
GACACCGAGGAAAGTCAGCTGAGCAGCAACTGCATTCATAGCTCTCTGTT
TCTTGACTGTGGATGCCCTGTGACCAGCTGCCTTGTGCAGTGCTGCTGTG
ACTCCCGCTTGCTCCCATGGTGGACTGTATCCCCCTAGAACTGTGAGCCA
GGTAAACCCTTCCACCCTTAAGCTGCTTTGGN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCCTGAAAAACACCTAGTGTAAGGTTGCCAGG
AAGTTATAATTGGACTTGAAGGTAAGCCACAGTGAAACCAATCAAAGCCC
AAATTCTAGCAGATATTGGCAATGGGTTAATTCAGCAGCTGTCAGCCACA
AACTAAAGGCCACAGATGAACTAAGTTCTCCAAGAAGTTAGACACACACA
ACTGAGATTCTTCTAACTGCTGTTGTAAACTGCCATTTAAAGAGAAAAAC
AAGACAAACAGAAAACAATCAAAATCACAACAAGGTATTAAAACAGCCAG
TCTTGTCATCACTGCAGCATGAGCTGCTTCAGGTTGTCATGAAGGATCGT
GTCCTTCACGTCCCGGAACACGAGGCGGATGTTCTCTGTGTTGATCGCGG
TGGTGAAGTGGTGGTACAACGGCCTCTGCTGCTGGTCCCGGCGTTTCCCC
CGGAAGCATTCCACCAGAAACTTTTGGACGTCTCTTAAGCAGTGGGGGTC
CCCTTCAAATTCTAGGAAATAGTCTTTGATGCTAACAACTTGCACTTTCT
CCTCGAGCAAGTCTGTCTTGTTTAAGAAGAGGATTATGGAGACGTTGCTG
AAAACCCGATTGTTGACAATTGTTTCAAAAATGTTCAGAGATTCTGTAAG
GCGATTGGTCTGGCGGTCCTCCATAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o08.b1 MSMg01no545_o08.b1 CHROMAT_FILE:
MSMg01no545_o08.b1 PHD_FILE: MSMg01no545_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:00 2005
         (692 letters)



>mm_chr11_109109825_109110916
          Length = 1092

 Score = 1292 bits (668), Expect = 0.0
 Identities = 683/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcccatagccataggcttacttttagggaagatggatcattttttaaaaaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcccatagccataggcttacttttagggaagatggatcattttttaaaaaaac 264

                                                                       
Query: 65  tattaatttgggaaggtataaaggctatctgaagattcttatgagaccctgacctgtaac 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 tattaatttgggaaggtataaaggctatctgaagatttttatgagaccctgacctgtaac 324

                                                                       
Query: 125 ctaatgttggaagtcagcagtgacaaaatatggttcattggaacctacggtcagttttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaatgttggaagtcagcagtgacaaaatatggttcattggaacctacggtcagttttca 384

                                                                       
Query: 185 cgttgcctgtcatgtttgacctaaagcagacattctcttacacacctatcactcgtgatt 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 cgttgcctgtcatgtttgacttaaagcagacattctcttacacacctatcattcgtgatt 444

                                                                       
Query: 245 tagcaagacaaatcagggacataccctccaagagacaccgaagacttcactgtggacctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcaagacaaatcagggacataccctccaagagacaccgaagacttcactgtggacctc 504

                                                                       
Query: 305 attaaggcctgttggtaatacatgatctggaaagagagacggctgttagaagacagctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attaaggcctgttggtaatacatgatctggaaagagagacggctgttagaagacagctgt 564

                                                                       
Query: 365 gattgttagtcacgactcgggaatcacttgacagacagacagacagacctctggggatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gattgttagtcacgactcgggaatcacttgacagacagacagacagacctctggggatgt 624

                                                                       
Query: 425 ctatgtggggatttctagactgggttgtgatgggaggccccacccttatagtgaacagca 484
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 ctatgtggggatttctagactgggttgtgatgggaggccccacccttaaagtgaacagca 684

                                                                       
Query: 485 ccaggccacaggccgggctccaggattgaagacaccgaggaaagtcagctgagcagcaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccaggccacaggccgggctccaggattgaagacaccgaggaaagtcagctgagcagcaac 744

                                                                       
Query: 545 tgcattcatagctctctgtttcttgactgtggatgccctgtgaccagctgccttgtgcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgcattcatagctctctgtttcttgactgtggatgccctgtgaccagctgccttgtgcag 804

                                                                       
Query: 605 tgctgctgtgactcccgcttgctcccatggtggactgtatccccctagaactgtgagcca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgctgctgtgactcccgcttgctcccatggtggactgtatccccctagaactgtgagcca 864

                                       
Query: 665 ggtaaacccttccacccttaagctgctt 692
           |||||||||||||||||||||| |||||
Sbjct: 865 ggtaaacccttccacccttaagttgctt 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no545_o08.g1 MSMg01no545_o08.g1 CHROMAT_FILE:
MSMg01no545_o08.g1 PHD_FILE: MSMg01no545_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:00 2005
         (535 letters)



>mm_chr11_109257359_109258293
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcctgaaaaacacctagtgtaaggttgccaggaagttataattggacttgaaggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaggcctgaaaaacacctagtgtaaggttgccaggaagttataattggacttgaaggtaa 676

                                                                       
Query: 61  gccacagtgaaaccaatcaaagcccaaattctagcagatattggcaatgggttaattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gccacagtgaaaccaatcaaagcccaaattctagcagatattggcaatgggttaattcag 616

                                                                       
Query: 121 cagctgtcagccacaaactaaaggccacagatgaactaagttctccaagaagttagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cagctgtcagccacaaactaaaggccacagatgaactaagttctccaagaagttagacac 556

                                                                       
Query: 181 acacaactgagattcttctaactgctgttgtaaactgccatttaaagagaaaaacaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acacaactgagattcttctaactgctgttgtaaactgccatttaaagagaaaaacaagac 496

                                                                       
Query: 241 aaacagaaaacaatcaaaatcacaacaaggtattaaaacagccagtcttgtcatcactgc 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 495 aaacagaaaacaatcaaaatcacaacaaggtattaaaacagcgagtcttgtcatcactgc 436

                                                                       
Query: 301 agcatgagctgcttcaggttgtcatgaaggatcgtgtccttcacgtcccggaacacgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agcatgagctgcttcaggttgtcatgaaggatcgtgtccttcacgtcccggaacacgagg 376

                                                                       
Query: 361 cggatgttctctgtgttgatcgcggtggtgaagtggtggtacaacggcctctgctgctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cggatgttctctgtgttgatcgcggtggtgaagtggtggtacaacggcctctgctgctgg 316

                                                                       
Query: 421 tcccggcgtttcccccggaagcattccaccagaaacttttggacgtctcttaagcagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcccggcgtttcccccggaagcattccaccagaaacttttggacgtctcttaagcagtgg 256

                                                                  
Query: 481 gggtccccttcaaattctaggaaatagtctttgatgctaacaacttgcactttct 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gggtccccttcaaattctaggaaatagtctttgatgctaacaacttgcactttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)