XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTC
TGCCTGCAGTTAGCCTTTAAAGACAGTATAAGGTCAACAGGATTTTTTTT
TGCCTATTTTTAAATGATATTGTGGTAAATATATGATATAAAATGTAGTA
GTGCTATGTATATCGAAAACTGAATTAATAATTTCAACCTTCTGCAAAGA
AAACTCTAGGTGGCTGTCAACCCGCGAGGAAGGTATGATGCTATGTTTCA
CAAAATCTTCCAGAAGTAGAAAAAAATGGAGGAGCCTCCAAGGCATTTTA
TTTAGATTTTAGAACTTTAGGTTGGCAAGAAAGGAGATTTAGCAATTCAA
ATGTAGAGATTATGTAAGTTAGAAAGCTGAATCCTAGGGAAGGGTACAGG
TAGTAACCAAGTTACTGCAGGAATACAAGGGTAGTTGACTTATGATTCTA
AACTATTAACATAATTTAGCATAGTATCAGCCTAGGGAAAAAAACAAGAC
TTAATTATTTCAATCAGAAAATGAATTTGTTAAGTTGTTATACTTAGTTG
TGAATATAACTCTTAATAAACTATAGAAACATCATCTTAGCACACAGCGA
AGATAACCTTCAGAAACCGAAGGATAACACTGTATTGCTGAGCTGTTCAA
GCGTTTCTTCCTGAGAAAGTAGGAGTGTGAAAGATTCTGCTCTCAGCACT
CCTCTTTAAACTCTACTAAAAGTTGGAGCAAAAAC

AATATATATATATATCCCCTCTTCCTCCTCTTTTCTACTTCCTTATTCAA
TTTCTTCATTTACATTTTACTCCATATAACATCATAAATATATCTTCTTA
TTAATTACAACACTTTCACATACTTCCCTTTATATTATTTCTTCTCCTCC
CCTTTCTCCATTAAAATTTATTTATCATACCATACATGTTTAGCATACCA
ATCTGTTTCTAATCTTCTGACTTTTTTCATCACACACTCTCACAATCTCT
AATCAAATACCGAAATATTTTTTCCCTCCTTCCAACATTTCCTTCCCCTT
AAACAATAAATCCCTAACAACATTCATACTTTTCCCTAACTACATATTCC
TACTATTACTAAACCCATTTATTCTCATTTTTTTTTTCCAATAGCATATT
ATAAAAATTACACATATACACTAACCTTCCCAACATAAATATTTATTCTC
CCCCTCTCTTATTATATTACCATTCTTGTTCTCTTTAATAATATATACTT
TAGGTCTTTTTATTCTTCTAATTCATTTTATTTTCTTTCTCCCTCATATG
ACACAAAATTGTGTGGTTTAAGGCCCCTTTGAGCCGGGAACCCCGTACCC
CTGTAAACCCTCTTTTTCCCCAAAAAATTTTTTAAGGGGTGTTGAAAACA
CCCTTTAAAATAATAAAAACAGGTGTATTTTCTCGTCTCTGTGCATATAA
TTTTCATTATATAAACAACATCTTTTGTGTTAAAACCCCCAAAAAAAATT
TTTAAACCCCCTTTACAAAAAAATACCTAAAAACATTTTCTTTCTTATTT
TCAAGATGAATC

Query= MSMg01no546_i04.b1 MSMg01no546_i04.b1 CHROMAT_FILE:
MSMg01no546_i04.b1 PHD_FILE: MSMg01no546_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:50 2005
         (520 letters)



>mm_chr11_65798824_65799743
          Length = 920

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctgcctgcagttagcctttaaagacagtataaggtcaacagga-tttttttttgc 67
           |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 208 gaattctgcctgcagaaagcctttaaagacagtataaggtcaacaggattttttttttgc 267

                                                                       
Query: 68  ctatttttaaatgatattgtggtaaatatatgatataaaatgtagtagtgctatgtatat 127
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctattttaaaatgatattgtggtaaatatatgatataaaatgtagtagtgctatgtatat 327

                                                                       
Query: 128 cgaaaactgaattaataatttcaaccttctgcaaagaaaactctaggtggctgtcaaccc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgaaaactgaattaataatttcaaccttctgcaaagaaaactctaggtggctgtcaaccc 387

                                                                       
Query: 188 gcgaggaaggtatgatgctatgtttcacaaaatcttccagaagtagaaaaaaatggagga 247
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gggaggaaggtatgatgctatgtttcacaaaatcttccagaagtagaaaaaaatggagga 447

                                                                       
Query: 248 gcctccaaggcattttatttagattttagaactttaggttggcaagaaaggagatttagc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcctccaaggcattttatttagattttagaactttaggttggcaagaaaggagatttagc 507

                                                                       
Query: 308 aattcaaatgtagagattatgtaagttagaaagctgaatcctagggaagggtacaggtag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aattcaaatgtagagattatgtaagttagaaagctgaatcctagggaagggtacaggtag 567

                                                                       
Query: 368 taaccaagttactgcaggaatacaagggtagttgacttatgattctaaactattaacata 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 taaccaagttactgcaggaatacaagggtagttgacttatgattctaaactattaacata 627

                                                                       
Query: 428 atttagcatagtatcagcctagggaaaaaaacaagacttaattatttcaatcagaaaatg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttagcatagtatcagcctagggaaaaaaacaagacttaattatttcaatcagaaaatg 687

                                            
Query: 488 aatttgttaagttgttatacttagttgtgaata 520
           |||||||||||||||||||||||||||||||||
Sbjct: 688 aatttgttaagttgttatacttagttgtgaata 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)