BAC Information

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BAC

Clone NameMSMg01-546I15
Chromosome11 (Build37)
Map Location 30,119,578 - 30,120,087
singlet/doubletsinglet
Overlap geneSpnb2
Upstream geneLOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
Downstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546I15.T7 (MSMg01no546_i15.b1)MSMg01-546I15.TJ (MSMg01no546_i15.g1)
ACCAG611340AG611341
length739739
length of high quality
(start - end)
696 (44 - 739)293 (200 - 492)
definitionCHROMAT_FILE: MSMg01no546_i15.b1 PHD_FILE: MSMg01no546_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:52 2005CHROMAT_FILE: MSMg01no546_i15.g1 PHD_FILE: MSMg01no546_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCACTTA
ATTTATCCATGTAGATGCTGATACAGCCCTGATAAAACATTAAACCTTCA
CCTTAAACTTTTTTGGTTCATTTTGCTCTGTTTTGGTTTTTTTCAAGACA
TGGTTTCTCTGTGTAGCCATAGCTGTCTTGTACTCCAGGCTGGCCTCAGA
CACATAGAGATCAGCCTGCCTCTGCCTCCTGAGTACTGGGATTAAAGGTG
TGCACCATCACTGCCCAGACACTTTAAACTCCTTTAGGAAAGAACATTAA
TTTGGCACCCAGTGTTTCCTTCAGTCTTCTCCCTCCTCCGGGTTTGGGGA
AAGCATTAAAGTAGCATGACCGAGGTCACACATGTGCTATGAAGCAGAGC
CAAAGTTCAGAACTGGCCTTGGCTCTAGAAGGCACATCTGGACAAGCAGT
GACTGTCCTAGTTTTTCCTTATTATCACCCCAGCAGGTGTATAGAGGATG
TACACTTTGTATACACACCTGTGCTTTTCCTTTTTTACTCACAGAACTCT
GAAAAGTAACTGATGTGGACAAGCAGCTGAGACAGTCAAGATGACGACCA
CGGTAGCCACAGACTATGACAACATTGAGATCCAGCAGCAGTACAGTGAT
GTGAACAACCGCTGGGATGTGGATGACTGGGACAATGAGAACAGCTCTGC
AAGGCTCTTTGAGCGCTCCCGCATCAAGGCCCTGGCAGG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACCTTCAGTCTGTGGAGGAAGGTCCAGGACAGCCAAGC
TTGGGCAGTGAAGGAGCTGGAAAACAAAAAGCTAGTGATAATGGTATTAG
TACAAAGGGGCCATGTTACAGCTCCTGCAATCAGCAAAACTTGGCAGCAT
TGAACACGTGGCTCTGGCTTTAGAGTCAAGAATAGAAGGAACTACTAGGA
CAATTGATGCTGGTTAGCTGGAGCTAAAAAATTAATGGTGATTAAGAAGA
GACCAGCATCACTGAGGTGAAATCTTCTGGGAACTGTTTTCTGAGAGCAC
AAAGAAGCTGTGTTCCAGAGATAGCCAAGACTGTACCATATGCTGCAGCT
GTACTTGATGATGTGTAAGGGTTATTGGTTTTGAAGCATGAAGGGATCAT
GAAGAGTAGCTGAAGCTTGACACTCTGAGAGGCCATGGAAGACCATTGGC
GAAGGTACAGCCTCGGTTGTAGTTGATGGCCTAGCACTGAAGGGGTCATG
CAAAGGAGTTAAGGTTTAGCACTATGAAGAGAGCCTATGAGAGGCTATTG
GTGAAGGCTATTTGCCCCTGTAGACTCTCATGTATTGGACATGCCAGTAC
CATGTGATGACTATCAAGAACAGTAGAAGCAATGGAGTAGAGTCAACCAT
AGCCTATAATTGCACAGAGGCATAATTGAAGATATGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_i15.b1 MSMg01no546_i15.b1 CHROMAT_FILE:
MSMg01no546_i15.b1 PHD_FILE: MSMg01no546_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:52 2005
         (696 letters)



>mm_chr11_30118992_30120087
          Length = 1096

 Score =  986 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Minus

                                                                        
Query: 187  tgagtactgggattaaaggtgtgcaccatcactgcccagacactttaaactcctttagga 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 tgagtactgggattaaaggtgtgcaccatcactgcccagacactttaaactcctttagga 1037

                                                                        
Query: 247  aagaacattaatttggcacccagtgtttccttcagtcttctccctcctccgggtttgggg 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aagaacattaatttggcacccagtgtttccttcagtcttctccctcctccgggtttgggg 977

                                                                        
Query: 307  aaagcattaaagtagcatgaccgaggtcacacatgtgctatgaagcagagccaaagttca 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  aaagcattaaagtagcatgaccgaggtcacacatgtgctatgaagcagagccaaagttca 917

                                                                        
Query: 367  gaactggccttggctctagaaggcacatctggacaagcagtgactgtcctagtttttcct 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  gaactggccttggctctagaaggcacatctggacaagcagtgactgtcctagtttttcct 857

                                                                        
Query: 427  tattatcaccccagcaggtgtatagaggatgtacactttgtatacacacctgtgcttttc 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  tattatcaccccagcaggtgtatagaggatgtacactttgtatacacacctgtgcttttc 797

                                                                        
Query: 487  cttttttactcacagaactctgaaaagtaactgatgtggacaagcagctgagacagtcaa 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  cttttttactcacagaactctgaaaagtaactgatgtggacaagcagctgagacagtcaa 737

                                                                        
Query: 547  gatgacgaccacggtagccacagactatgacaacattgagatccagcagcagtacagtga 606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  gatgacgaccacggtagccacagactatgacaacattgagatccagcagcagtacagtga 677

                                                                        
Query: 607  tgtgaacaaccgctgggatgtggatgactgggacaatgagaacagctctgcaaggctctt 666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  tgtgaacaaccgctgggatgtggatgactgggacaatgagaacagctctgcaaggctctt 617

                                          
Query: 667  tgagcgctcccgcatcaaggccctggcagg 696
            ||||||||||||||||||||||||||||||
Sbjct: 616  tgagcgctcccgcatcaaggccctggcagg 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)