BAC Information

Click to search

BAC

Clone NameMSMg01-546K12
Chromosome11 (Build37)
Map Location 30,597,010 - 30,757,970
singlet/doubletdoublet
Overlap geneLOC666470, LOC631243, Psme4
Upstream geneRtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
Downstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546K12.T7 (MSMg01no546_k12.b1)MSMg01-546K12.TJ (MSMg01no546_k12.g1)
ACCAG611428AG611429
length733734
length of high quality
(start - end)		697 (37 - 733)665 (70 - 734)
definitionCHROMAT_FILE: MSMg01no546_k12.b1 PHD_FILE: MSMg01no546_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:01 2005CHROMAT_FILE: MSMg01no546_k12.g1 PHD_FILE: MSMg01no546_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,597,010 - 30,597,700)(30,757,367 - 30,757,970)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTT
GGTCATAAAGAAAGAAGGATCCTGGTTCCTTTTTGCCTCCCCTCTCCTCT
CCTCCTGGTAAATAGCTCTTTAGTCAAACTCAGCCCAAAGCTACAGGAAC
AGGGGAAGGTCAAGAAATATGCCAGGTGAATCTGAAGGGGCTAAGAAAAA
AAAAGCCCATGTTCTTTATTTTACAGTAGATCTCTGTCCTGGTTAGTTTT
AACTTGACAGAGCCTAGAACCTCAACCGAGGCCTTGCCTAAATCATATTG
GCCTGTGGGCATGTCTAGAAGGGATTGTCTTGGATAATAATTGGACCTAG
CACACTGAGGGTAACACTATTTCTTGGGCAGGTGGTTCTGAGCATATAAA
AAGCTAGCTGACTAAAAAAAGATATAAATCTATCCTAGAGCCAGTTAGCC
AGCAGCATCCTCCATGACTTCTGCTGTACTTCTTGACTCAAGTAAGTTCT
TTGGTTAGAGATAATACTGTGTGGAAAAGCAAGCAGGCACACCTTTAAGT
TCCTGATGTAACTTTCCACAGTGATGATCTGTGAGGGGGATTTGCTAGAT
GAATAAATCCTTCCTTCCTCTAAGTTGCTCTTGGTAAGGGTAATTTATTA
CAGCAACAGAATGATCTTTCTCTTTAACAGTACTAGTTTCTACTTATAAC
TTTACAGCTAAAAGTGATTAAAAATTAGTCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTCTGTAGCCCACGCTGGCTTTGAAATATA
TCCTCCCCCCATCTCTAAAATGCTGGGGATTTGAGGCATGCACCAACATA
CCTAACCTTAAGAATGTCTTGATTTTGATGGGTATGAAACTGCTTTATAT
GGTTTCACTTTATGTTAAATTTGTGCGTCAGAGGATAATAACTTACAGAT
ATCTATTCTCTTCTTCCATTACAGGGGTTCTAAGAATTAATTTCAGGCTT
TTAAGTTTGACAACAGGTACCACTGAGCCACTGTGATAGCTCTAGGGTTA
ACCTTTTAAATAAAAGTGTTAATGTACCATATCTGGTAATTTATTAAAAA
ACAAACACAACATGCAACTGTAAAATACATGTTATATAGAAGATGTTGAT
GAATGAAAAAGAACACAGTGAGAGGGGCAAATGATTAAACCACATTATCG
ACCATTTTTAGTGTTCTCCACATGCCTGACACATTCACTAAACACTTTGC
ACAGGCAGGCTACTTTTTCACTTGGTTTAGAATCCAATAGATTAGCATAC
TATTTTTTTTTTAATCTGAACTCTTGGTCTTTGCTAATAGCAATGTCAGG
AGCAGAAAATTCAGATGAAATGATACTCATGTTACTGATTCAATCACAGA
ACTCAATTTTAACAATGAAAGATATGTAATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_k12.b1 MSMg01no546_k12.b1 CHROMAT_FILE:
MSMg01no546_k12.b1 PHD_FILE: MSMg01no546_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:01 2005
         (697 letters)



>mm_chr11_30596805_30597901
          Length = 1097

 Score = 1328 bits (687), Expect = 0.0
 Identities = 690/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttggtcataaagaaagaaggatcctggttcctttttgcctcccctctcctctc 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcttggtcagaaagaaagaaggatcctggttcctttttgcctcccctctcctctc 265

                                                                       
Query: 66  ctcctggtaaatagctctttagtcaaactcagcccaaagctacaggaacaggggaaggtc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctcctggtaaatagctctttagtcaaactcagcccaaagctacaggaacaggggaaggtc 325

                                                                       
Query: 126 aagaaatatgccaggtgaatctgaaggggctaagaaaaaaaaagcccatgttctttattt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagaaatatgccaggtgaatctgaaggggctaagaaaaaaaaagcccatgttctttattt 385

                                                                       
Query: 186 tacagtagatctctgtcctggttagttttaacttgacagagcctagaacctcaaccgagg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacagtagatctctgtcctggttagttttaacttgacagagcctagaacctcaaccgagg 445

                                                                       
Query: 246 ccttgcctaaatcatattggcctgtgggcatgtctagaagggattgtcttggataataat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccttgcctaaatcatattggcctgtgggcatgtctagaagggattgtcttggataataat 505

                                                                       
Query: 306 tggacctagcacactgagggtaacactatttcttgggcaggtggttctgagcatataaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggacctagcacactgagggtaacactatttcttgggcaggtggttctgagcatataaaa 565

                                                                       
Query: 366 agctagctgactaaaaaaagatataaatctatcctagagccagttagccagcagcatcct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agctagctgactaaaaaaagatataaatctatcctagagccagttagccagcagcatcct 625

                                                                       
Query: 426 ccatgacttctgctgtacttcttgactcaagtaagttctttggttagagataatactgtg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccatgacttctgctgtacttcttgactcaagtaagttctttggttagagataatactgtg 685

                                                                       
Query: 486 tggaaaagcaagcaggcacacctttaagttcctgatgtaactttccacagtgatgatctg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tggaaaagcaagcaggcacacctttaagttcctgatgtaactttccacagtgatgatctg 745

                                                                       
Query: 546 tgagggggatttgctagatgaataaatccttccttcctctaagttgctcttggtaagggt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgagggggatttgctagatgaataaatccttccttcctctaagttgctcttggtaagggt 805

                                                                       
Query: 606 aatttattacagcaacagaatgatctttctctttaacagtactagtttctacttataact 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aatttattacagcaacagaatgatctttctctttaacagtactagtttctacttataact 865

                                          
Query: 666 ttacagctaaaagtgattaaaaattagtctt 696
           |||||||||||||||||||||||||||||||
Sbjct: 866 ttacagctaaaagtgattaaaaattagtctt 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no546_k12.g1 MSMg01no546_k12.g1 CHROMAT_FILE:
MSMg01no546_k12.g1 PHD_FILE: MSMg01no546_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:01 2005
         (665 letters)



>mm_chr11_30756906_30757970
          Length = 1065

 Score = 1168 bits (604), Expect = 0.0
 Identities = 604/604 (100%)
 Strand = Plus / Minus

                                                                        
Query: 62   ttgaggcatgcaccaacatacctaaccttaagaatgtcttgattttgatgggtatgaaac 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ttgaggcatgcaccaacatacctaaccttaagaatgtcttgattttgatgggtatgaaac 1006

                                                                        
Query: 122  tgctttatatggtttcactttatgttaaatttgtgcgtcagaggataataacttacagat 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tgctttatatggtttcactttatgttaaatttgtgcgtcagaggataataacttacagat 946

                                                                        
Query: 182  atctattctcttcttccattacaggggttctaagaattaatttcaggcttttaagtttga 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  atctattctcttcttccattacaggggttctaagaattaatttcaggcttttaagtttga 886

                                                                        
Query: 242  caacaggtaccactgagccactgtgatagctctagggttaaccttttaaataaaagtgtt 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  caacaggtaccactgagccactgtgatagctctagggttaaccttttaaataaaagtgtt 826

                                                                        
Query: 302  aatgtaccatatctggtaatttattaaaaaacaaacacaacatgcaactgtaaaatacat 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  aatgtaccatatctggtaatttattaaaaaacaaacacaacatgcaactgtaaaatacat 766

                                                                        
Query: 362  gttatatagaagatgttgatgaatgaaaaagaacacagtgagaggggcaaatgattaaac 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  gttatatagaagatgttgatgaatgaaaaagaacacagtgagaggggcaaatgattaaac 706

                                                                        
Query: 422  cacattatcgaccatttttagtgttctccacatgcctgacacattcactaaacactttgc 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  cacattatcgaccatttttagtgttctccacatgcctgacacattcactaaacactttgc 646

                                                                        
Query: 482  acaggcaggctactttttcacttggtttagaatccaatagattagcatactatttttttt 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  acaggcaggctactttttcacttggtttagaatccaatagattagcatactatttttttt 586

                                                                        
Query: 542  ttaatctgaactcttggtctttgctaatagcaatgtcaggagcagaaaattcagatgaaa 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  ttaatctgaactcttggtctttgctaatagcaatgtcaggagcagaaaattcagatgaaa 526

                                                                        
Query: 602  tgatactcatgttactgattcaatcacagaactcaattttaacaatgaaagatatgtaat 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  tgatactcatgttactgattcaatcacagaactcaattttaacaatgaaagatatgtaat 466

                
Query: 662  atta 665
            ||||
Sbjct: 465  atta 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |