Query= MSMg01no546_o07.b1 MSMg01no546_o07.b1 CHROMAT_FILE:
MSMg01no546_o07.b1 PHD_FILE: MSMg01no546_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(497 letters)
>mm_chr11_76804314_76805210
Length = 897
Score = 870 bits (450), Expect = 0.0
Identities = 484/496 (97%), Gaps = 3/496 (0%)
Strand = Plus / Plus
Query: 5 gaattctctcgtgtttcatgctgactgtcagaaaccaaggcctgataatgggacacgact 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcgtgagtcatgctgactgtcagaaaccaaggcctgataatgggacacgact 264
Query: 65 tcccatgttgtgacatctgtgggtacaaggcactttcctcaagtggctcctgtgggaggg 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 tcccatgttgtgacatctgtgggtacaaggcactctcctcaagtggctcctgtgggaggg 324
Query: 125 gagtgcctggctcaccatggctgcagttagccatttgtggattttgtttataaagtggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 gagtgcctggctcaccatggctgcagttagccatttgtggattttgtttttaaagtggtt 384
Query: 185 ccagatgagacctcttatatttagggcatgttcataacttccatggagatgccacttagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 ccagatgagacctcttatatttagggcatgttcataacttccatggagatgtcacttagt 444
Query: 245 ctctggggcttgtgggacacaggtactgaaactaggaataaactggccagagttttctgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctggggcttgtgggacacaggtactgaaactaggaataaactggccagagttttctgt 504
Query: 305 gtcctcttttagactcaaatctttcccacattcctacagagggaaaggaagaggggaggg 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcctcttttagactcaagtctttcccacattcctacagagggaaaggaagaggggaggg 564
Query: 365 agcgggcattcagctcgtaccagcctgagggagggtgtacctcctttgctcaccctcttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcgggcattcagctcgtaccagcctgagggagggtgtacctcctttgctcaccctcttg 624
Query: 425 cctacccctggcaggaccccttacgaagaaacacagctggaagtgagcttct-c--ctcc 481
||||||||||||||||||||||| | |||||||||||||||||||||||||| | ||||
Sbjct: 625 cctacccctggcaggaccccttatgcagaaacacagctggaagtgagcttcttcttctcc 684
Query: 482 tcctcctcctcctcct 497
| ||||||||||||||
Sbjct: 685 ttctcctcctcctcct 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o07.g1 MSMg01no546_o07.g1 CHROMAT_FILE:
MSMg01no546_o07.g1 PHD_FILE: MSMg01no546_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(459 letters)
>mm_chr11_76964766_76965624
Length = 859
Score = 864 bits (447), Expect = 0.0
Identities = 456/459 (99%)
Strand = Plus / Minus
Query: 1 cttaaacacctgtgccacagcgcagaagaattccgggagatcatactgactgacatgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttaaacacctgtgccacagcgcagaagaattccgggagatcatactgactgacatgcgg 600
Query: 61 aggcagatgtttgcagaactcttcctacagtgcgacagtgggaaggtaagtgaaacacca 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 599 aggcagatgtttgcagaactcttcctacagtgcgacagtgggaaggtaggtgaaacacca 540
Query: 121 caaactccctctgttcctcacagtttgatgtgagggaccagccttgacgtggtgcttgtt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caaactccctctgctcctcacagtttgatgtgagggaccagccttgacgtggtgcttgtt 480
Query: 181 ggtgatgttctaaatttcgaaaacatcgagtttgatgatggtggcctactgaccactatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggtgatgttctaaatttcgaaaacatcgagtttgatgatggtggcctactgaccactatt 420
Query: 241 tggtaatgaaattggtgactaagggggaaaagaaatacagagcataccgtctacgccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tggtaatgaaattggtgactaagggggaaaagaaatacagagcataccgtctacgccttt 360
Query: 301 aaactctaagattaaaacctgacttagcagccactttctcaaactgctagaaagtttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaactctaagattaaaacctgacttagcagccactttctcaaactgctagaaagtttttt 300
Query: 361 gctcctattctagaaaacttttgtttgtacctgtcttcttattgaattggcccaccctgt 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatcctattctagaaaacttttgtttgtacctgtcttcttattgaattggcccaccctgt 240
Query: 421 gcacaccttgagtgacattgcttttcagcactttcagct 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcacaccttgagtgacattgcttttcagcactttcagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
