Query= MSMg01no547_c01.b1 MSMg01no547_c01.b1 CHROMAT_FILE:
MSMg01no547_c01.b1 PHD_FILE: MSMg01no547_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:40 2005
(657 letters)
>mm_chr11_61044896_61045952
Length = 1057
Score = 793 bits (410), Expect = 0.0
Identities = 425/430 (98%), Gaps = 2/430 (0%)
Strand = Plus / Minus
Query: 229 gaatgaatggctaggagaacacatatcaaacagagcaagcagttaacacaggaccttgct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gaatgaatggctaggagaacacatatcaaacagagcaagcagttaacacaggaccttgct 998
Query: 289 tggggtataagttagaatagctcagaacctgcccagtctaggattgtagcttggtattag 348
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 tggggtgtaagttagaatagctcagaacctgcccagtctaggattgtagcttggtattag 938
Query: 349 aaattattttctgtgtctcttatttgggagctaaatgggaaagggtgggacagaaaacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 aaattattttctgtgtctcttatttgggagctaaatgggaaagggtgggacagaaaacct 878
Query: 409 gcaataaaaatatttttactctcagtgctagtgaacttttgctgctgggtaagagtcact 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gcaataaaaatatttttactctcagtgctagtgaacttttgctgctgggtaagagtcact 818
Query: 469 acagtttgacattgaatttcaaaagccgttaatcaagagactctgcttccaatagtacac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 acagtttgacattgaatttcaaaagccgttaatcaagagactctgcttccaatagtacac 758
Query: 529 cataaggaaattaccagatcagatttcccataagaattcaggggagtgccacgaagtcct 588
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 757 cataaggaaattaccagatcagatttcccataagaattcaggggagtgtcacgaagtcct 698
Query: 589 cataagacaggaagtactaggtacacatccacacaagagtcccaaccgccttctaga-an 647
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 697 cataagacaggaagtactaggtacacatccacacaagagtcccaaccaccttctagata- 639
Query: 648 aaggagctca 657
||||||||||
Sbjct: 638 aaggagctca 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_c01.g1 MSMg01no547_c01.g1 CHROMAT_FILE:
MSMg01no547_c01.g1 PHD_FILE: MSMg01no547_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:40 2005
(599 letters)
>mm_chr11_60897001_60897999
Length = 999
Score = 1056 bits (546), Expect = 0.0
Identities = 589/616 (95%), Gaps = 21/616 (3%)
Strand = Plus / Plus
Query: 5 aattctacccaccagagatgcagtcgatgggcaggagagatggcccagtcagtgaagtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aattctacccaccagagatgcagtcgatgggcaggagagatggcccagtcagtgaagtgt 243
Query: 65 tgctacacaaacatgaagacctgagtttggatccccagaacccatataaagtcttggcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgctacacaaacatgaagacctgagtttggatccccagaacccatataaagtcttggcat 303
Query: 125 agcagcaggcatagcagcaggcacagcagcaggcac------------ctgagatcccag 172
||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 304 agcagcaggcacagcagcaggcacagcagcaggcacagcagcaggcacctgagatcccag 363
Query: 173 tgctggcaagatccctggggcttgcaagcagcttagctgcattcgtgagcttcaggttca 232
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 364 tgctggcaagatccctggggcttgcaagcagcttagatgcattcgtgagcttcaggttca 423
Query: 233 ctaatagaccctgtctctaaagagatggagatcaattgaggaagacttccaatagtgact 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctaatagaccctgtctctaaagagatggagatcaattgaggaagacttccaatagtgact 483
Query: 293 gctgacctagtgtatgtgctcatttaacgcctgcctc---------aacaacaacaacaa 343
||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 484 gctgacctagtgtatgtgctcatttaatgcctgcctccacaacaacaacaacaacaacaa 543
Query: 344 catacacacacacctaaataaataaatattcttatatttggaaccagtagagggcagaaa 403
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 544 catacacacacacctaaataaataaatattcttgtatttggaaccagtagagggcagaaa 603
Query: 404 ccccttgtcgttggaaagtgttgctcagactactggcaagtcacattctggtgtctttgg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccccttgtcgttggaaagtgttgctcagactactggcaagtcacattctggtgtctttgg 663
Query: 464 ttcttggcatctggaccaatagacacccttaaagagaacagctaagtctcctgacttaat 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctcttggcatctggaccaatagacacccttaaagagaacagctaagtctcctgacttaat 723
Query: 524 cagcatgtagaagtccaagtagcctttctgaaatgaagtagcaaaggacacagaacagtc 583
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 724 cagcatgtagaagtccaagtagcctttctgaaatgaggtagcaaaggacacagaacagtc 783
Query: 584 actcaaattacagtgg 599
||||||||||||||||
Sbjct: 784 actcaaattacagtgg 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
