BAC Information

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BAC

Clone NameMSMg01-547F14
Chromosome11 (Build37)
Map Location 21,944,680 - 21,945,343
singlet/doubletsinglet
Overlap geneEhbp1
Upstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1
Downstream geneLOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547F14.T7 (MSMg01no547_f14.b1)MSMg01-547F14.TJ (MSMg01no547_f14.g1)
ACCAG611959AG611960
length765753
length of high quality
(start - end)
669 (31 - 699)664 (64 - 727)
definitionCHROMAT_FILE: MSMg01no547_f14.b1 PHD_FILE: MSMg01no547_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:58 2005CHROMAT_FILE: MSMg01no547_f14.g1 PHD_FILE: MSMg01no547_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAATACACTCCTATAGGTTGAGGATCCGCGGAATTCCCTCAACC
TTATCCCCAACTCTGTAGAAGGAAACCTGCTTTGGTCTCTCTTTCCTCTC
TGACCCATCCCCAAGGGATGACACAGATCTTCTTCAACCTTTCCTCTCCC
AGCTCATCTCAGTATCCCAACCTCTAACACCAGCAGGTATTCACTGTGAA
CACACCAGCTGAGCAGACCAGAAAAACAGGTGGCACACAGGCATTACACT
GAAAATCCAGAAAGAAATCAGAAACCAAGGAACAAAACACTCACCCAATA
AAGGCAAACCCAGAAATTAGCACCTAGACATAATCACCCAAACGCAGATT
CCTAGATGCCAGAATAAAAACACAATAACAACAAGGGCAAAATGTTGTCA
ATAGAGCCCAGCTATCCTTCCAGAACTGACCCTGAGTATTCCAGCACAGC
TGAAGCACAAGAAAAAGACCTTAAAACCAACTATAAGAAGATGATAGAAG
TCCTCAAATAGGAAATGGATACATCCTCTAATGAAATCCAGGACAAAAAC
AAACAAAAAAAATTGGAAGAAATAAACCCCTTAAATCCAAGAAAATACAA
GCAACCAGTTGAAGGAATTAAATAAGACTGTTTAAGGCATAAACATGGAC
CTAGAGTTAATAAAGAATGCAAACTGAGGGATTGTGGATATGAAAAAATT
TAGGAATTTGAACGGGGACTATAGAGGAAAGCTTCTCCAACAGAATACAG
GAAATAGAAGAGAGA
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTTTCTAACAACTCTTAATTACTGCATTGCCCTAAT
GATGCTCATGGTTATGAAAATTGAACCAGTAAACTCTGTGGAAGAAGCCA
GAGGGGATTATAATTCCAGAGGTGGCGCTCTCTTAATAAACTTGTTACGC
CTTCACCAGAGGGAGCCCAGTGTCCTTCAAAAGAATTTAATTTTGTATTT
TAGAATTTGCATCTCCAATGTAAGGAGTTAAAACATTTAGGAGGAATAAT
TCAAACCTCTGTTTATGAGAAGTGAGAGAATGTTACCCCAGCGCCTTTGA
AGCATTTCAATCTTTCAAGAATTAGGGGATAGGTCACTGAAGATGCTTCT
ATTGTCTGAATCTGAGGTAAGATGGTTAGGCAAGATCCCCCAACATGGGC
TTTTCCCCGTAGTGTGGTCTCCTACATCAGGTAAGGGTGGTGGAGATACT
GCAGGCTCAATGGACATTTGCCTACTGTGTTTCTGAAATCGACTGGCTTT
TACTTAGCCAGAGCCATATCAGAGTAGCTTCAGAAGAGAGAGTCAGTGCT
TTTATTTCTGATTTGTTTCCAACCTAGTGAAATTTATATCATAGAACTAA
TAAAACATTTTCAAACTTGGGCCTCAATTATTTTCTTGTTTTCTACTTTG
TTGGCGTGTGTTGTTATGTCATGATTCTTCATTAGTGGGTCCCATGGACC
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_f14.g1 MSMg01no547_f14.g1 CHROMAT_FILE:
MSMg01no547_f14.g1 PHD_FILE: MSMg01no547_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:58 2005
         (664 letters)



>mm_chr11_21944480_21945543
          Length = 1064

 Score = 1253 bits (648), Expect = 0.0
 Identities = 660/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttctaacaactcttaattactgcattgccctaatgatgctcatggttatgaaaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actttctaacaactcttaattactgcattgccctaatgatgctcatggttatgaaaattg 805

                                                                       
Query: 61  aaccagtaaactctgtggaagaagccagaggggattataattccagaggtggcgctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaccagtaaactctgtggaagaagccagaggggattataattccagaggtggcgctctct 745

                                                                       
Query: 121 taataaacttgttacgccttcaccagagggagcccagtgtccttcaaaagaatttaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taataaacttgttacgccttcaccagagggagcccagtgtccttcaaaagaatttaattt 685

                                                                       
Query: 181 tgtattttagaatttgcatctccaatgtaaggagttaaaacatttaggaggaataattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtattttagaatttgcatctccaatgtaaggagttaaaacatttaggaggaataattca 625

                                                                       
Query: 241 aacctctgtttatgagaagtgagagaatgttaccccagcgcctttgaagcatttcaatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacctctgtttatgagaagtgagagaatgttaccccagcgcctttgaagcatttcaatct 565

                                                                       
Query: 301 ttcaagaattaggggataggtcactgaagatgcttctattgtctgaatctgaggtaagat 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 ttcaagaattaggggataggtcactgaagatgcttctgttgtctgaatctgaggtaagat 505

                                                                       
Query: 361 ggttaggcaagatcccccaacatgggcttttccccgtagtgtggtctcctacatcaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttaggcaagatcccccaacatgggcttttccccgtagtgtggtctcctacatcaggta 445

                                                                       
Query: 421 agggtggtggagatactgcaggctcaatggacatttgcctactgtgtttctgaaatcgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agggtggtggagatactgcaggctcaatggacatttgcctactgtgtttctgaaatcgac 385

                                                                       
Query: 481 tggcttttacttagccagagccatatcagagtagcttcagaagagagagtcagtgctttt 540
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 384 tggcttttacttagccagagccatgccagagtagcttcagaagagagagtcagtgctttt 325

                                                                       
Query: 541 atttctgatttgtttccaacctagtgaaatttatatcatagaactaataaaacattttca 600
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttctgatgtgtttccaacctagtgaaatttatatcatagaactaataaaacattttca 265

                                                                       
Query: 601 aacttgggcctcaattattttcttgttttctactttgttggcgtgtgttgttatgtcatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacttgggcctcaattattttcttgttttctactttgttggcgtgtgttgttatgtcatg 205

               
Query: 661 attc 664
           ||||
Sbjct: 204 attc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)