Query= MSMg01no547_m18.b1 MSMg01no547_m18.b1 CHROMAT_FILE:
MSMg01no547_m18.b1 PHD_FILE: MSMg01no547_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:31 2005
(637 letters)
>mm_chr11_50121005_50122041
Length = 1037
Score = 1191 bits (616), Expect = 0.0
Identities = 631/636 (99%), Gaps = 3/636 (0%)
Strand = Plus / Plus
Query: 5 gaatt-aaagagcaaactttgaaaaacacatacttcctctcataaaactgcatgcaaatt 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaagagcaaactttgaaaaacacatacttcctctcataaaactgcatgcaaatt 263
Query: 64 attctattagctttaaagaaaaccttatgattttatagtgcttcttcagataccaatcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attctattagctttaaagaaaaccttatgattttatagtgcttcttcagataccaatcaa 323
Query: 124 aaataactggcaaccaccagaaatactaaaatgcttttttaaagagaagttatgtgcata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 aaataactggcaaccaccagaaatactaaaatgcttttttaaagagaagttatgtacata 383
Query: 184 caaacttctttcaaaaacaagaaataaacttgagaaaactaaaaattgttagcacacagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaacttctttcaaaaacaagaaataaacttgagaaaactaaaaattgttagcacacagg 443
Query: 244 tgaggcctccctggtctacagagcaaactccatgcagcaagggatacccacccaatgata 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaggcctccctggtctacacagcaaactccatgcagcaagggatacccacccaatgata 503
Query: 304 tcctgtgtaaaaatacaaaacaaaacaataaaaaacctaaaaattccacagttaagaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctgtgtaaaaatacaaaacaaaacaataaaaaacctaaaaattccacagttaagaaag 563
Query: 364 cagcaatgaaatacagctaaggcttctacagtcccctgttaaagttaaaaggccattagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagcaatgaaatacagctaaggcttctacagtcccctgttaaagttaaaaggccattagt 623
Query: 424 gccaagtctccatggttcaccagcagcagcatttcttttcataggtcttgcaaacttttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccaagtctccatggttcaccagcagcagcatttcttttcataggtcttgcaaacttttc 683
Query: 484 tctctttaaatgatggg-actaaacccagggccctgtgaatggcagccatgtactctacc 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctctttaaatgatggggactaaacccagggccctgtgaatggcagccatgtactctacc 743
Query: 543 actgaactgcataccccc-aagctcaagatcataaagcacatgttacacaaagagagagc 601
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgaactgcataccccccaagctcaagatcataaagcacatgttacacaaagagagagc 803
Query: 602 ctaccaggctgagctctgccgtcttggaaagcagct 637
||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctaccaggctgagctctgccgtcttggaaagcagct 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_m18.g1 MSMg01no547_m18.g1 CHROMAT_FILE:
MSMg01no547_m18.g1 PHD_FILE: MSMg01no547_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:31 2005
(621 letters)
>mm_chr11_50264923_50265946
Length = 1024
Score = 787 bits (407), Expect = 0.0
Identities = 436/451 (96%), Gaps = 12/451 (2%)
Strand = Plus / Minus
Query: 180 gaaaatattgggagagatggctcattggttaagagcactgactgctcttccagaggccct 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1024 gaaaatattgggagagatggctcattggttaagagcagtgactgctcttccagaggccct 965
Query: 240 gagttcaattcccagcaaccacatggtggctcacaaccatctttaatagatctgatgctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gagttcaattcccagcaaccacatggtggctcacaaccatctttaatagatctgatgctc 905
Query: 300 tcttctggtgtgtgtctgaaaacagctacagtgtactcacatacatagaataaataaatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tcttctggtgtgtgtctgaaaacagctacagtgtactcacatacatagaataaataaa-- 847
Query: 360 tt--aaaaaaagaga----gagaaaatatttaaaagctatgagacttctaaaagaaatat 413
| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 846 -taaaaaaaaagagagagtgagaaaatatttaaaagctatgagacttctaaaagaagtat 788
Query: 414 aaattaaaagttctctaaatcattgaatcaataagctggttttgctcttttgaacaaatg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aaattaaaagttctctaaatcattgaatcaataagctggttttgctcttttgaacaaatg 728
Query: 474 aaaatttttgtcaatttcatatatttgtattcactcaggggcaggtgtttaaaaaa---a 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 727 aaaatttttgtcaatttcatatatttgtattcactcaggggcaggtgtttaaaaaaagca 668
Query: 531 acggaaatcacctaagaaatgtatttaaataattacataacttttcagctccctttaagc 590
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atggaaatcacctaagaaatgtatttaaataattacataacttttcagctccctttaagc 608
Query: 591 tagtaatacaagaactgggggtgttgctcca 621
|||||||||||||||||||||||||||||||
Sbjct: 607 tagtaatacaagaactgggggtgttgctcca 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1024
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1014
Effective search space: 619554
Effective search space used: 619554
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
