Query= MSMg01no548_b01.b1 MSMg01no548_b01.b1 CHROMAT_FILE:
MSMg01no548_b01.b1 PHD_FILE: MSMg01no548_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:53 2005
(488 letters)
>mm_chr11_30678200_30679087
Length = 888
Score = 919 bits (475), Expect = 0.0
Identities = 486/491 (98%), Gaps = 3/491 (0%)
Strand = Plus / Minus
Query: 1 tgagttccaggacagtcagggctatacagagaaaccccatgtcaaaaaaact---aaaaa 57
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 812 tgagttccaggacagccagggctatacagagaaaccccatgtcaaaaaaactaaaaaaaa 753
Query: 58 aaaaaaaaaaaagaaaagaaaagaaaaaaaagaaagaaagaaagaaagaaaagaaaaaga 117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaaaaaaaaaaaaaaaagaaaagaaaaaaaagaaagaaagaaagaaagaaaagaaaaaga 693
Query: 118 aaaagataccagaaacaatctacaacctccacattatttcttatattcttgtagctcaat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaaagataccagaaacaatctacaacctccacattatttcttatattcttgtagctcaat 633
Query: 178 cagtaattgctgactctatgagctgagaacaaagcaaaatgaacaaataaacaaacaaac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cagtaattgctgactctatgagctgagaacaaagcaaaatgaacaaataaacaaacaaac 573
Query: 238 aacatgccatgccagtagcaaagaagctgtgagcttgggactgattagtgccctgtcggt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aacatgccatgccagtagcaaagaagctgtgagcttgggactgattagtgccctgtcggt 513
Query: 298 catcactgtctacaagattccaagacagcacttgcctcatcacagaaaacaacatgctgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 catcactgtctacaagattccaagacagcacttgcctcatcacagaaaacaacatgctgg 453
Query: 358 tactgaagggaaagatccgaggctccctcaccactaagaggagacaacagacactgtagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tactgaagggaaagatccgaggctccctcaccactaagaggagacaacagacactgtagg 393
Query: 418 ctgatgtgcacagcagcatcacagaagtccttagccccagagccaaaccttatagcccat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgatgtgcacagcagcatcacagaagtccttagccccagagccaaaccttatagcccat 333
Query: 478 gtttgcttgtt 488
|||||||||||
Sbjct: 332 gtttgcttgtt 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_b01.g1 MSMg01no548_b01.g1 CHROMAT_FILE:
MSMg01no548_b01.g1 PHD_FILE: MSMg01no548_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:53 2005
(664 letters)
>mm_chr11_30533978_30535041
Length = 1064
Score = 1284 bits (664), Expect = 0.0
Identities = 664/664 (100%)
Strand = Plus / Plus
Query: 1 aagaccaacctgggcaactttgtctcaagataataaagataagagcagagaaaaggtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaccaacctgggcaactttgtctcaagataataaagataagagcagagaaaaggtcat 260
Query: 61 ccatgcatgcagcccagtgatacattttcccagcatgtgaacagccctagacagtcccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgcatgcagcccagtgatacattttcccagcatgtgaacagccctagacagtcccca 320
Query: 121 attccacaaaactaaattaattaataagctaatgaacatttgagatagagtaggtgatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccacaaaactaaattaattaataagctaatgaacatttgagatagagtaggtgatat 380
Query: 181 aaaatttacttttccccagtttttagaatttctttttttaaatagaagaactaattcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatttacttttccccagtttttagaatttctttttttaaatagaagaactaattcaag 440
Query: 241 tttaaatagcttatattgtttctagttatagtcagcatcaggaaatgaaatgtgcttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaatagcttatattgtttctagttatagtcagcatcaggaaatgaaatgtgcttgac 500
Query: 301 ctcagctgggcttccagaacctcatcattaatggaaattaatgcagatgaaaatgacccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcagctgggcttccagaacctcatcattaatggaaattaatgcagatgaaaatgacccc 560
Query: 361 tgtaggctctttggtgtagctgatactccatgaatactgtggatcacgtggttgattggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaggctctttggtgtagctgatactccatgaatactgtggatcacgtggttgattggt 620
Query: 421 attgttcatgttagttacgttttctctttttagactgtggcagacgaagctgttccattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgttcatgttagttacgttttctctttttagactgtggcagacgaagctgttccattt 680
Query: 481 gtggtttggggatttggcttagtggcaaggcactagtatagcaagcttgaggaactgggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggtttggggatttggcttagtggcaaggcactagtatagcaagcttgaggaactgggt 740
Query: 541 tccatcttcagtggcatagctgcacttgtatatagatccagacacccatccacagaagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccatcttcagtggcatagctgcacttgtatatagatccagacacccatccacagaagga 800
Query: 601 atactagcaatttcatatctcatgttttatatctacaaccaaacagtgatacatggagta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atactagcaatttcatatctcatgttttatatctacaaccaaacagtgatacatggagta 860
Query: 661 cgcg 664
||||
Sbjct: 861 cgcg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
