Query= MSMg01no548_j04.b1 MSMg01no548_j04.b1 CHROMAT_FILE:
MSMg01no548_j04.b1 PHD_FILE: MSMg01no548_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:31 2005
(599 letters)
>mm_chr11_108707505_108708504
Length = 1000
Score = 1108 bits (573), Expect = 0.0
Identities = 591/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatctttcctcttctctgtcccacccaaggctgtactgaagagtgtgacaggat 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 652 ggaattcatctttcctcttctctgtcccatccaaggctgtactgaagagtgtgacaggat 593
Query: 64 ctacgtcaatcatgatgtcacaaatgactgattaaggcttgggcacatgatcctggcacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctacgtcaatcatgatgtcacaaatgactgattaaggcttgggcacatgatcctggcacc 533
Query: 124 caaactcatgaacagcacaaggcactggctctctgacctcatccagcagcctttt-ccca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 532 caaactcatgaacagcacaaggcactggctctctgacctcatccagcagccttttcccca 473
Query: 183 ggggaagttggtaatgtgactgctatcttgctgtagtggagtgaaaccagactcgcagta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 472 ggggaagttggtaatgtgactgctatcttgctgtagtggagtgaaaccagactggcagta 413
Query: 243 aagctaccccaggggaggatgagcgagaacccggccccttgaacagactgactcttcctg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aagctaccccaggggaggatgagcgagaacccggccccttgaacagactgactcttcctg 353
Query: 303 aagtcagtagttttctgatactctagtttttgtcagttgtgatcataatagtctagatca 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagtcagtggttttctgatactctagtttttgtcagttgtgatcataatagtctagatca 293
Query: 363 aaacaatgcagaacaagcaagatattaacttgcatgatgcacattgcattcattagacca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaacaatgcagaacaagcaagatattaacttgcatgatgcacattgcattcattagacca 233
Query: 423 aaggtctgtgaacctcaggttgcaagtttcccagtatggtagtgcatgcctgtcattgca 482
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 232 aaggtctgtgaacctcaggttgcaagtttcccagtatggtagtacatgcctgtcattgca 173
Query: 483 gcctcaagaggttaagatgggatcactaagcctctgaggtcatctagggctatatagaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gcctcaagaggttaagatgggatcactaagcctctgaggtcatctagggctatatagaga 113
Query: 543 gacctgacttaacaaatgggtaaaagtcaaaaactcaaacaaatcaattagaactga 599
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 112 gacctgacttaacaaatgggtaagagtcaaaaactcaaacaaatcaattagaactga 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space: 583110
Effective search space used: 583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_j04.g1 MSMg01no548_j04.g1 CHROMAT_FILE:
MSMg01no548_j04.g1 PHD_FILE: MSMg01no548_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:31 2005
(564 letters)
>mm_chr11_108657890_108658853
Length = 964
Score = 946 bits (489), Expect = 0.0
Identities = 546/585 (93%), Gaps = 34/585 (5%)
Strand = Plus / Plus
Query: 1 ggccatgtgtgcaaaaaccataggaacactgcggaatgagtacagaagcaataccattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ggccatgtgtgcaaaaaccataggaacactgcggaatgagtacagaagcaataccattcc 252
Query: 61 cctagtgctgctctccagactgtctgagtgagtatattgttggtcctcgggaggacaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 253 cctagtgctgctctccagactgtctgagtgagtatattgttggtcctcaggaggacaaaa 312
Query: 121 tgacctctatgagaaccaggtcctatgaaagtttttggttgtcacattagccaaaggaag 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgacctctaggagaaccaggtcctatgaaagtttttggttgtcacattagccaaaggaag 372
Query: 181 tgaatacacat--------------------tgttgtgtgtgttccctctcaaaacacta 220
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 373 tgaatacacatgggagaaaaaacccttccattgttgtgtgtgttccctctcaaaacacta 432
Query: 221 cacacacacacacacacacacacacacacactttcatgtgacccagatgggagaggcaca 280
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 433 cacacacacacacacacac------------tttcatgtgacccagatgggagaggcaca 480
Query: 281 gcttggtcaggtcttttgatttcccccatccatttccattctcctagagttgcacttcca 340
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 gcttggtcaggtcttttgatttcccccatccatttccattctcctagagatgcacttcca 540
Query: 341 ccttttctatggaggaacacctgtcttccgttctcatttcctaacctggagatggaactg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccttttctatggaggaacacctgtcttccgttctcatttcctaacctggagatggaactg 600
Query: 401 aatttgtgattcattctggtgcaagcatgtgactcaacctgccagtcagaatatcctgtt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatttgtgattcattctggtgcaagcatgtgactcaacctgccagtcagaatatcctgtt 660
Query: 461 cttctgtcctttgggatgagaggaggaccctcctgatctttaatatttatttccactggg 520
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cttctgtcctttgggatgaggggaggaccctcctgatctttaatatttatttccactggg 720
Query: 521 agg-agggagagtatgtgtgtttggtgtttcaagagaaaacaaag 564
||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 721 agggagg-agagtgtgtgtgtttggtgtttcaagagaaaacaaag 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
