Query= MSMg01no548_o22.b1 MSMg01no548_o22.b1 CHROMAT_FILE:
MSMg01no548_o22.b1 PHD_FILE: MSMg01no548_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:00 2005
(527 letters)
>mm_chr11_6374089_6375013
Length = 925
Score = 994 bits (514), Expect = 0.0
Identities = 521/524 (99%), Gaps = 3/524 (0%)
Strand = Plus / Plus
Query: 5 gaattcttctcttgccctgtccatgattgtgtaaagttgcattccttttcataaacctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctcttgccctgtccatgattgtgtaaagttgcattccttttcataaacctgt 264
Query: 65 accctcagaactgggtaactgcaaaaggcctctttcttctcaaagattccactaagacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accctcagaactgggtaactgcaaaaggcctctttcttctcaaagattccactaagacct 324
Query: 125 agatccaaaatgctgatttcgatggaggtgaagggatagatgctgatagtagtgaggcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatccaaaatgctgatttcgatggaggtgaagggatagatgctgatagtagtgaggcct 384
Query: 185 ggagggatcctaagaccagattacccaggaagaacacaaattcagctattcccaatgcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagggatcctaagaccagattacccaggaagaacacaaattcagctattcccaatgcat 444
Query: 245 gagtctgggtaacccaggtgtggttttggtcccagacgctcgaagatctatctatccctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagtctgggtaacccaggtgtggttttggtcccagacgctcgaagatctatctatccctt 504
Query: 305 ccagtgttttcctgatgaatttccgaacctcggttttaaacaacagaagctgagactctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagtgttttcctgatgaatttccgaacctcggttttaaacaacagaagctgagactctt 564
Query: 365 gcgcaggtgaggagatgctgctgtcctctttgcaggttgctggcagttccttggaactta 424
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcgcaggtgaggagatgctgct--cctctttgcaggttgctggcagttccttggaactta 622
Query: 425 actgcttttctctaattgtctgtgactgttttcttatggttatttctcttaactatatta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actgcttttctctaattgtctgtgactgttttcttatggttatttctcttaactatatta 682
Query: 485 ttttatttttttttt-gttttcttcgtctgcggcctcccctgat 527
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 ttttatttttttttttgttttcttcgtctgcggcctcccctgat 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 925
Length adjustment: 10
Effective length of query: 517
Effective length of database: 915
Effective search space: 473055
Effective search space used: 473055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_o22.g1 MSMg01no548_o22.g1 CHROMAT_FILE:
MSMg01no548_o22.g1 PHD_FILE: MSMg01no548_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:00 2005
(592 letters)
>mm_chr11_6424485_6425478
Length = 994
Score = 358 bits (185), Expect = e-103
Identities = 270/313 (86%), Gaps = 32/313 (10%)
Strand = Plus / Minus
Query: 1 ctagcacccatatgaaagctcagccgtttgaaacttcctcctggggatctgacaccctct 60
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 302 ctagcacccatatgaaagctcagcagattgaaacttcctcctggggatctgacaccctct 243
Query: 61 ----tctagcct-cctagggcaccactgcatagacagatggaggcactgggtggtgg-tg 114
|||||||| ||| |||||||| ||||| |||||||||||| |||| ||| |
Sbjct: 242 tctatctagcctccct-gggcaccaatgcat--acagatggaggc----ggtgatggct- 191
Query: 115 gcaggcgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcgaag 174
|| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 190 -ca--cgcctttaatccgagcacttgggaggcagaggcaggcagatttctaagttcgaag 134
Query: 175 ccagcctggtctacaaagtgagtgccaggacagccaaggttatacagagaaaccctgtct 234
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ccagcctggtctactaagtgagtgccaggacagccaaggttatacagagaaaccctgtct 74
Query: 235 tgaaaa----aacaacaaaaaaa-----------aagtcaattgggctggttgagatggc 279
|||||| ||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 73 tgaaaaaaacaacaacaaaaaaaaaaaaaataggaagtcaattgaactgattgagatggc 14
Query: 280 ttagctttaagag 292
||||| |||||||
Sbjct: 13 ttagcattaagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 994
Length adjustment: 10
Effective length of query: 582
Effective length of database: 984
Effective search space: 572688
Effective search space used: 572688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
