Query= MSMg01no548_p13.b1 MSMg01no548_p13.b1 CHROMAT_FILE:
MSMg01no548_p13.b1 PHD_FILE: MSMg01no548_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:02 2005
(639 letters)
>mm_chr11_99547089_99548127
Length = 1039
Score = 1228 bits (635), Expect = 0.0
Identities = 638/639 (99%)
Strand = Plus / Minus
Query: 1 gtcctaatatccaaaacatggatctttgacaatacacatttagagcaaacctgagattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gtcctaatatccaaaacatggatctttgacaatacacatttagagcaaacctgagattct 780
Query: 61 ctaatacatttgcctgctctttctttcagtagctgcacattagaaacaacactctagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ctaatacatttgcctgctctttctttcagtagctgcacattagaaacaacactctagcat 720
Query: 121 cgtgtttaagagaactgacataaataaatcatgtgcttagggtcatttggcaagtgggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cgtgtttaagagaactgacataaataaatcatgtgcttagggtcatttggcaagtgggga 660
Query: 181 caatgatccttagttatctgaagttaggatcccaaggaagtgcaagtcacccagaagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 caatgatccttagttatctgaagttaggatcccaaggaagtgcaagtcacccagaagaac 600
Query: 241 tagaagatatgtggcacaaatccaggaagaatcatccagtttataatcctggaagaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tagaagatatgtggcacaaatccaggaagaatcatccagtttataatcctggaagaagga 540
Query: 301 aacactctagatacatttcctccacagactgtccagagacgagagggagtttgttgggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aacactctagatacatttcctccacagactgtccagagacgagagggagtttgttgggga 480
Query: 361 ttttattcaccccacttcacttagcagaatgataattgggtctaagagcagattaggtgc 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttattccccccacttcacttagcagaatgataattgggtctaagagcagattaggtgc 420
Query: 421 cattctcacaggtaaggagatgaactaagggagtttttcgctctagctcatcatgatggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cattctcacaggtaaggagatgaactaagggagtttttcgctctagctcatcatgatggt 360
Query: 481 tggaattgtttgggatgatttccagtaacaaacaagtttgacatgtattctgtttcaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggaattgtttgggatgatttccagtaacaaacaagtttgacatgtattctgtttcaata 300
Query: 541 tattcttctcataaccacaatcccagcgaagctacccagttcagcattggcattacccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tattcttctcataaccacaatcccagcgaagctacccagttcagcattggcattacccac 240
Query: 601 agccgtcctggacagggctagttcctataggtctcttag 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agccgtcctggacagggctagttcctataggtctcttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p13.g1 MSMg01no548_p13.g1 CHROMAT_FILE:
MSMg01no548_p13.g1 PHD_FILE: MSMg01no548_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:02 2005
(655 letters)
>mm_chr11_99505175_99506226
Length = 1052
Score = 1125 bits (582), Expect = 0.0
Identities = 629/656 (95%), Gaps = 20/656 (3%)
Strand = Plus / Plus
Query: 1 gggtttctgagagagtgatttgaggatctgaaggtctcctggctggtattcccttttata 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gggtttctgagagagtgatttgaggatctgaaggtctccgggctggtattcccttttata 260
Query: 61 ctctgctcagcaagtggtgttaccatgagcaaagctcccttccttgttttcctaaccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgctcagcaagtggtgttaccatgagcaaagctcccttccttgttttcctaaccagg 320
Query: 121 aaattaat-agtgctattaaagcataatcatgtttacaaggttaaatatcccaatgtttc 179
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattaattagtgctattaaagcataatcatgtttacaaggttaaatatcccaatgttta 380
Query: 180 gaaagggcatcattttcttttcctacattcttatgattcattgaattaaggcatgtgaaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gaaagggcatcattttcttttcctacattcttatgattcattgaattaaggcgtgtgaaa 440
Query: 240 tgacactcgtgcttctatttctgcctatgtatcttctaaactgaaactagcacacaatac 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tgacactcgtgcttctatttctgcctatgtaccttctaaactgaaactagcacacaatac 500
Query: 300 atgtgtcacttatgattgattgcctgataatattttgagaatggctcacaaaacgttgtc 359
|||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 501 atgtgtcacttacgattg----cctgataatattttgagaatggctc------------- 543
Query: 360 tccttttctgtggataagcttaatctattgcctggtagagcatcggtgcagttacttgta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 --cttttctgtggataagcttaatctattgcctggtagagcatcggtgcagttacttgta 601
Query: 420 tacaatcagggacaagtatattcatagctgtaattattgtacccacatggttagcatttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tacaatcagggacaagtatattcatagctgtaattattgtacccacatggttagcatttt 661
Query: 480 atgagcattattcaatgccaaagactcgtttaaggagccaacttctccccctagggatcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atgagcattattcaatgccaaagactcgtttaaggagccaacttctccccctagggatcc 721
Query: 540 tctctgtgtgtggcatatgaaatatgaatgggtttcatctgtctcctgataagccagcat 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tctctgtgtgtggcatatggaatatgaatgggtttcatctgtctcctgataagccagcat 781
Query: 600 atgcagtggattctgttttctataaaagaaaaaaaagttccatgcaaaaatccttc 655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atgcagtggattctgctttctataaaagaaaaaaaagttccatgcaaaaatccttc 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1052
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1042
Effective search space: 672090
Effective search space used: 672090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
