BAC Information

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BAC

Clone NameB6Ng01-001D21
Chromosome12 (Build37)
Map Location 86,261,556 - 86,383,656
singlet/doubletdoublet
Overlap gene1110018G07Rik, Fcf1, Ylpm1
Upstream gene2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2
Downstream geneProx2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001D21.bB6Ng01-001D21.g
ACCDH839620DH839621
length1,1721,174
definitionDH839620|Mus musculus domesticus DNA, BAC clone: B6Ng01-001D21, 5' end.DH839621|Mus musculus domesticus DNA, BAC clone: B6Ng01-001D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,261,556 - 86,262,724)(86,382,456 - 86,383,656)
sequence
gaattcatactacaagaaacatgggcaagggctagaaagagactccccca
ccagggatgcttcgggcagcctaccatgtgtgtgcagtaggaagcgtgct
atgggttggagcagcaataatctgaaatgagggacagagggcagcaaatc
ctccaggtgggagctgagaagagcctgttgtaaactgaagcagcctagcc
agttcctcctgggtcagactggaaaccacagcccaaaaccacctcatgac
ctggcaggaaaagacagggctttcatcaacatgacatgcagcctaagatc
tgactcctaaggaaggaccaggatactgtggggaggcacatgctcccagt
tacagcactatgaggcatgaataacaatccctgcaagaatttacattgtc
acaggatcagcgggtaatcaccaattgattgcttggctctgcttacttcc
attcccacccattaccgcagtggtagtcaaggcacctgtctttagggacc
tgagctcctttcggcttggataactacctgttttcccagaatcattgttt
tgccagtcaacatgtcaacttcttcgactcttctacatttgtcttctaaa
accattccacttaagtcaataccaacccaactgtgaaagcttagcccatt
accttttctctgaaatgccaggatccaccaaccactacagcatgggcttt
gaagtcagatacattgatgtctccagtcccacacatcagcagctagacag
acagaaggacaaagacattctatttagtcagttacctacatacatgggta
tgcagaatgaaaccaatgccaggagaaagacagaaaatgagatcacagtg
ctagaatgaactgtaataggccaatgattcctaattagtgtggggatttc
aaaaaaacaaacaaaacaaaacaaaaatcacagtattaataaatccacac
cacttacacacacacacacacacacacacacacacaccacatacacacac
actcacacccgattcagcagaaaacaaagtgattattgtgcaagccagcc
aacctgagttggatcctagaacgccacagtggaaggggtgtaacaaactc
cctagagagtggttccctgaacctcggaataacccacagcaccaaataaa
gctctggtggcaattgtatgcc
gaattcaagggaggagaattcaagtatgtacttgcctagaaattgttctt
ccttttccaaactatacatataatgggaagagtacattgttcacaaaatc
tctttcaacacactgactgtggccaggcaaggaggcacatgcctttattc
ccagcattcaggagacaagggaaggcagatctctttgagtttaaagccag
cctggtaatcacaagttccaggaaagccagagctatataatagagaggac
cttatctcaaaacaaaacaaaaaccactacccccaaatccaaaaacaaac
aaacaaacaaacaaacaaacaaacaaatgactttcactggatttacacaa
gaaattttacatgtatatatagcaaaggtatttttcacagcatacctgtc
atctcggggtctgcgctctctgtcaaatcggtcccgctcatagtcaagaa
cacgatctcggtctctatctctatgtgtctctcggtcccttttaaaatct
cgatgatctgttatattacttggacggtcaaaataaggttcacggtctct
atctctatcatagcgatcacgctggcctgcatgatctataaaaacaatac
aaactaagaactagaagcattttcagaaattaaagcaagacgtgcaattt
taacttgagaatgtaaattagtcttaaatttaggaatctttcagtgatat
taaactagactaaccttgttaaaaggaaaatcttgtaataattaggtcct
caagttaagcttaaaattactctcctctctgggaatcctacctgcatcaa
aagttgaccttttcaggtaatggatctggacgtagagttattctttctcc
atatggtatctgttcaactttattagtaggcatatctggcaaagaaacca
ggatgaaatataagcatgaagcttaagaaaaccaaatctcaactagtaat
tcctgtagaagtctggcctggtagtatatcctataatcccagccgccagg
agttaagcagagacccaagcttgagggaatgtgtgttcaagcagcagaat
tggtcttgaaaacttaagtctcgttcttgaaaacagttctggtcagtgct
tgtacgactattaattccagaatggtggaagtagaatgaattaggtcact
gtctgctagtcaatttgatcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86261556_86262724
seq2: B6Ng01-001D21.b_44_1215

seq1  GAATTCATACTACAAGAAACATGGGCAAGGGCTAGAAAGAGACTCCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTACAAGAAACATGGGCAAGGGCTAGAAAGAGACTCCCCCA  50

seq1  CCAGGGATGCTTCGGGCAGCCTACCATGTGTGTGCAGTAGGAAGCGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGCTTCGGGCAGCCTACCATGTGTGTGCAGTAGGAAGCGTGCT  100

seq1  ATGGGTTGGAGCAGCAATAATCTGAAATGAGGGACAGAGGGCAGCAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGGAGCAGCAATAATCTGAAATGAGGGACAGAGGGCAGCAAATC  150

seq1  CTCCAGGTGGGAGCTGAGAAGAGCCTGTTGTAAACTGAAGCAGCCTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTGGGAGCTGAGAAGAGCCTGTTGTAAACTGAAGCAGCCTAGCC  200

seq1  AGTTCCTCCTGGGTCAGACTGGAAACCACAGCCCAAAACCACCTCATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCCTGGGTCAGACTGGAAACCACAGCCCAAAACCACCTCATGAC  250

seq1  CTGGCAGGAAAAGACAGGGCTTTCATCAACATGACATGCAGCCTAAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGAAAAGACAGGGCTTTCATCAACATGACATGCAGCCTAAGATC  300

seq1  TGACTCCTAAGGAAGGACCAGGATACTGTGGGGAGGCACATGCTCCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTAAGGAAGGACCAGGATACTGTGGGGAGGCACATGCTCCCAGT  350

seq1  TACAGCACTATGAGGCATGAATAACAATCCCTGCAAGAATTTACATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACTATGAGGCATGAATAACAATCCCTGCAAGAATTTACATTGTC  400

seq1  ACAGGATCAGCGGGTAATCACCAATTGATTGCTTGGCTCTGCTTACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCAGCGGGTAATCACCAATTGATTGCTTGGCTCTGCTTACTTCC  450

seq1  ATTCCCACCCATTACCGCAGTGGTAGTCAAGGCACCTGTCTTTAGGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACCCATTACCGCAGTGGTAGTCAAGGCACCTGTCTTTAGGGACC  500

seq1  TGAGCTCCTTTCGGCTTGGATAACTACCTGTTTTCCCAGAATCATTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCTTTCGGCTTGGATAACTACCTGTTTTCCCAGAATCATTGTTT  550

seq1  TGCCAGTCAACATGTCAACTTCTTCGACTCTTCTACATTTGTCTTCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCAACATGTCAACTTCTTCGACTCTTCTACATTTGTCTTCTAAA  600

seq1  ACCATTCCACTTAAGTCAATACCAACCCAACTGTGAAAGCTTAGCCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCACTTAAGTCAATACCAACCCAACTGTGAAAGCTTAGCCCATT  650

seq1  ACCTTTTCTCTGAAATGCCAGGATCCACCAACCACTACAGCATGGGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCTCTGAAATGCCAGGATCCACCAACCACTACAGCATGGGCTTT  700

seq1  GAAGTCAGATACATTGATGTCTCCAGTCCCACACATCAGCAGCTAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGATACATTGATGTCTCCAGTCCCACACATCAGCAGCTAGACAG  750

seq1  ACAGAAGGACAAAGACATTCTATTTAGTCAGTTACCTACATACATGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGACAAAGACATTCTATTTAGTCAGTTACCTACATACATGGGTA  800

seq1  TGCAGAATGAAACCAATGCCAGGAGAAAGACAGAAAATGAGATCACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATGAAACCAATGCCAGGAGAAAGACAGAAAATGAGATCACAGTG  850

seq1  CTAGAATGAACTGTAATAGGCCAATGATTCCTAATTAGTGT-GGGATTTC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTAGAATGAACTGTAATAGGCCAATGATTCCTAATTAGTGTGGGGATTTC  900

seq1  AAAAAAACAAAACAAAACAAAACAAAAATCACAGTATTAATAAATCCACA  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAC-AAACAAAACAAAACAAAAATCACAGTATTAATAAATCCACA  949

seq1  CCACTTACACACACACACACACACACACACACACACACACACATACACAC  999
      |||||||||||||||||||||||||||||||||||||| |||||  ||||
seq2  CCACTTACACACACACACACACACACACACACACACAC-CACAT--ACAC  996

seq1  ACACACACACACACGATTCAGCAGAAAACAAAAGTGATTATTGTGCAAGC  1049
      |||||| ||||| |||||||||||||||| ||||||||||||||||||||
seq2  ACACACTCACACCCGATTCAGCAGAAAAC-AAAGTGATTATTGTGCAAGC  1045

seq1  CAGCCAACCTGAGTTGGATCCCTAGAACG-CACAGTGG-AGGGGTGTAAC  1097
      ||||||||||||||||||| ||||||||| |||||||| |||||||||||
seq2  CAGCCAACCTGAGTTGGAT-CCTAGAACGCCACAGTGGAAGGGGTGTAAC  1094

seq1  AAACT-CCTAGA-AGTGGTCCCCTG-ACCTCGG-ATATACCACAGCACAC  1143
      ||||| |||||| |||||| ||||| ||||||| |||  |||||||||  
seq2  AAACTCCCTAGAGAGTGGTTCCCTGAACCTCGGAATAACCCACAGCACCA  1144

seq1  AAT-AAGCTCT-GTGGCACATGTATGCC  1169
      ||| ||||||| ||||||  ||||||||
seq2  AATAAAGCTCTGGTGGCAATTGTATGCC  1172

seq1: chr12_86382456_86383656
seq2: B6Ng01-001D21.g_67_1240 (reverse)

seq1  TTGT-ATCAAATTGACTAGCCAGGACAGTGACCTAAAACTCCTGTCCTTA  49
      |||| |||||||||||||||   |||||||||||  || || |    |  
seq2  TTGTGATCAAATTGACTAGC--AGACAGTGACCT--AATTCAT----TCT  42

seq1  ACCTCCCACATTCTGGGATT-ATAGGTTTGTACCACAGCACCTGACAGGA  98
      || |||  |||||||| ||| ||||  | ||||   |||| |||||  ||
seq2  ACTTCCACCATTCTGGAATTAATAG--TCGTAC--AAGCA-CTGACCAGA  87

seq1  ATTGTTTTTCCAAAGAAGAGACTTTAAGTTTTTCAAGACCCAATCTTGCT  148
      | ||||||  |||  | ||||| ||||| ||||||||| |||||  ||||
seq2  ACTGTTTT--CAAGAACGAGAC-TTAAG-TTTTCAAGA-CCAATTCTGCT  132

seq1  GGCCCTGGAACACCACATTCCCCCAAGCTCTGGGTCCTCCTGCCTTAACT  198
      |   || ||||| ||||||||| |||||| ||||||   ||| |||||| 
seq2  G---CTTGAACA-CACATTCCCTCAAGCT-TGGGTC--TCTG-CTTAAC-  173

seq1  TCCTGGGGGCTGGGATTATAGGATATACTACCAGGCCAGACTTCTACAGG  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCGGCTGGGATTATAGGATATACTACCAGGCCAGACTTCTACAGG  223

seq1  AATTACTAATTTGAGATTTGGTTTTCTTAAGCTTCATGCTTATATTTCAT  298
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  AATTACT-AGTTGAGATTTGGTTTTCTTAAGCTTCATGCTTATATTTCAT  272

seq1  CCCTGGTTTTCTTTGCCAGATATGCCTACTAATAAAGTTGAACAGATACC  348
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -CCTGG-TTTCTTTGCCAGATATGCCTACTAATAAAGTTGAACAGATACC  320

seq1  ATATGGAGAAAGAATAACTCTACGTCCAGATCCATTACCTG-AAAGGTCA  397
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATGGAGAAAGAATAACTCTACGTCCAGATCCATTACCTGAAAAGGTCA  370

seq1  ACTTTTGATGCAGGTAGGATTCCCAGAGAGGAGAGTAATTTTAAGCTTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATGCAGGTAGGATTCCCAGAGAGGAGAGTAATTTTAAGCTTAA  420

seq1  CTTGAGGACCTAATTATTACAAGATTTTCCTTTTAACAAGGTTAGTCTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGACCTAATTATTACAAGATTTTCCTTTTAACAAGGTTAGTCTAG  470

seq1  TTTAATATCACTGAAAGATTCCTAAATTTAAGACTAATTTACATTCTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATCACTGAAAGATTCCTAAATTTAAGACTAATTTACATTCTCAA  520

seq1  GTTAAAATTGCACGTCTTGCTTTAATTTCTGAAAATGCTTCTAGTTCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTGCACGTCTTGCTTTAATTTCTGAAAATGCTTCTAGTTCTTA  570

seq1  GTTTGTATTGTTTTTATAGATCATGCAGGCCAGCGTGATCGCTATGATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTGTTTTTATAGATCATGCAGGCCAGCGTGATCGCTATGATAG  620

seq1  AGATAGAGACCGTGAACCTTATTTTGACCGTCCAAGTAATATAACAGATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGACCGTGAACCTTATTTTGACCGTCCAAGTAATATAACAGATC  670

seq1  ATCGAGATTTTAAAAGGGACCGAGAGACACATAGAGATAGAGACCGAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGATTTTAAAAGGGACCGAGAGACACATAGAGATAGAGACCGAGAT  720

seq1  CGTGTTCTTGACTATGAGCGGGACCGATTTGACAGAGAGCGCAGACCCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCTTGACTATGAGCGGGACCGATTTGACAGAGAGCGCAGACCCCG  770

seq1  AGATGACAGGTATGCTGTGAAAAATACCTTTGCTATATATACATGTAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAGGTATGCTGTGAAAAATACCTTTGCTATATATACATGTAAAA  820

seq1  TTTCTTGTGTAAATCCAGTGAAAGTCATTTGTTTGTTTGTTTGTTTGTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGTAAATCCAGTGAAAGTCATTTGTTTGTTTGTTTGTTTGTTT  870

seq1  GTTTGTTTGTTTTTGGATTTGGGGGTAGTGGTTTTTGTTTTGTTTTGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTTGGATTTGGGGGTAGTGGTTTTTGTTTTGTTTTGAGA  920

seq1  TAAGGTCCTCTCTATTATATAGCTCTGGCTTTCCTGGAACTTGTGATTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCCTCTCTATTATATAGCTCTGGCTTTCCTGGAACTTGTGATTAC  970

seq1  CAGGCTGGCTTTAAACTCAAAGAGATCTGCCTTCCCTTGTCTCCTGAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCTTTAAACTCAAAGAGATCTGCCTTCCCTTGTCTCCTGAATG  1020

seq1  CTGGGAATAAAGGCATGTGCCTCCTTGCCTGGCCACAGTCAGTGTGTTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATAAAGGCATGTGCCTCCTTGCCTGGCCACAGTCAGTGTGTTGA  1070

seq1  AAGAGATTTTGTGAACAATGTACTCTTCCCATTATATGTATAGTTTGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTTTGTGAACAATGTACTCTTCCCATTATATGTATAGTTTGGAA  1120

seq1  AAGGAAGAACAATTTCTAGGCAAGTACATACTTGAATTCTCCTCCCTTGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAACAATTTCTAGGCAAGTACATACTTGAATTCTCCTCCCTTGA  1170

seq1  ATTC  1201
      ||||
seq2  ATTC  1174