BAC Information

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BAC

Clone NameB6Ng01-001E14
Chromosome12 (Build37)
Map Location 89,531,291 - 89,532,240
singlet/doubletsinglet
Overlap genenone
Upstream geneTmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093
Downstream geneLOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E14.bB6Ng01-001E14.g
ACCDH839654DH839655
length9521,086
definitionDH839654|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E14, 5' end.DH839655|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggctgtcctcaaactcagaaatccacctgcc
tctgcctctgcctcccaagtgctgggattaaaggcgttcgccaccatgcc
cggcttctatgtgtatattttatagatcatatattttacacatataaatg
ttgactgtggctattaaagtgaaccaaccatttcgttttgtgtaggaata
atttttgcaacctacatttaatacatgttaaacctccctttagcccacca
cccagcaaataggtagtggaagagaaaaggtatggggaaagtgggcttgt
tcagcaatagttctttgggaacaaactttatggcaggagttcattcacat
agcaaacaggaaatacgactccacagctgcagacctcgaggcaggtagac
tccaggcacaaaccagcagctgttgttcaatcctgaaaataacgcagaga
tgtccaagaggcttgatgcaaggccacagaaacttcatagtcatttcttt
ggtgagtctttcagtgactgcgatattacaagttgagatcaacactgctt
atataaggcaaaccaaaatgtacctgtctttagtgaagaatagagaagtg
gaacaaaccaatccaaggctcagtgctagtctcccactgtctgtggggtc
acatttgtactccttcctcacagacccttcacatgtttgctatttcaaaa
cacctgttcacctgtttctgacttaggaaaactttctttcacatgtttgc
tttagcaagacatccttttttttttttcacctgtgtgccccagctcaaca
tcatttgacataagtaacttctcaaagatatagacgtttcaacttcacct
ttgtgctagagcagtaaaatagttcatgaaaggaaaattatgtgaaattc
tttcttctgaatggttgagtgagtgttgttgggtttttgtttgtttgttt
gt
gaattcagatgtacatcagaacatcagaaagcctttgaaaatattaagga
ggccctgctgactgcaccagccttggcattgccagatctaaccaagccct
tcatcctctatgttgatgagagggcggggtggccagaggagttcttactc
aggctctagagctgtggaagaggccggtggcatatttgtctaagaagctg
gacccagtggccagcggatggcccacatgtttaaaggccgttgatgcagt
aaccctactcattaaggatgctgacaaattaactctgggacagcaaataa
ctgtggtagccccccactctcttcaaagcattatctaccagcccccagat
caatagatgacaaatgcccggatgactcactaccagagtctgctgctgac
tgaacgggtcatgtttgctcatcctgctattctcaaccctgcctgcaaag
tgatctacgtgaccagccgtggccaggtgttccaaactggtacacagacc
gaagcagtttcctagtggaggatgggtggaggcctacccaacaacaacaa
caaaaaactgccaatgttgtggttaaaaaaaaatcctagaagaaattttt
ccatggtttggaatacctaaggtaatagggtctgacaatagacccacctt
tgttgcccaggtaaaccagggactggccatccaactggagattgattaga
aattacattgtgcttatagaccccagagttcaggacaggtagaaaagatg
aatagaactctaaaaaaacttgactaaattaatcttagagaccggcggga
attactggacagccctccttccctttgccttgttctgagtaaagacacac
tgggaacattcagctcaaccatatgaaatcctgtcctggggtgggggctc
ccccgctcactgaagtaaaggaatgttacatccctttaaatcacccctgg
tcctcatgtttacatgcatgaaagccctatagtggccagaaccccgcctg
aaagcagcttcaagagcctacgaccaggaaactgatgaaaccccaccagt
tcaggtggggagatggcattctccttctgacgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89531291_89532240
seq2: B6Ng01-001E14.b_51_998

seq1  TCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTG  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCACTCTGTAGACCAGGCTGTCCTCAAACTCAGAAATCCACCTGCCTCTG  50

seq1  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCGGC  100
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTTCGCCACCATGCCCGGC  100

seq1  TTCTATGTGTATATTTTATAGATCATATATTTTACACATATAAATGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGTATATTTTATAGATCATATATTTTACACATATAAATGTTGA  150

seq1  CTGTGGCTATTAAAGTGAACCAACCATTTCCCTTTGTGTAGGAATAATTT  200
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CTGTGGCTATTAAAGTGAACCAACCATTTCGTTTTGTGTAGGAATAATTT  200

seq1  TTGCAACCTACATTTAATACATGTTAAACCTCCCTTTAGCCCACCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCTACATTTAATACATGTTAAACCTCCCTTTAGCCCACCACCCA  250

seq1  GCAAATAGGTAGTGGAAGAGAAAAGTTATGGGGAAAGTGGGCTTGTTCAG  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAAATAGGTAGTGGAAGAGAAAAGGTATGGGGAAAGTGGGCTTGTTCAG  300

seq1  CAATAGTTCTTTGGGAACAAACTTGATCTTTATGGCAGGAGTTCATTCAC  350
      |||||||||||||||||||||      |||||||||||||||||||||||
seq2  CAATAGTTCTTTGGGAACAAA------CTTTATGGCAGGAGTTCATTCAC  344

seq1  ATAGCAAACAGGAAATACGACTCCACAGCTGCAGACCTCGAGGCAGATAG  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAGCAAACAGGAAATACGACTCCACAGCTGCAGACCTCGAGGCAGGTAG  394

seq1  ACTCCAGGCACAAACCAGCAGCTGTTGCTCAATCCTGAAAATAACGCAGA  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTCCAGGCACAAACCAGCAGCTGTTGTTCAATCCTGAAAATAACGCAGA  444

seq1  GATGTCCAAGAGGCCTGATGCAAGGCCACAGAAACTTCATAGGCATTTCT  500
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GATGTCCAAGAGGCTTGATGCAAGGCCACAGAAACTTCATAGTCATTTCT  494

seq1  TTGGTGAGTCTTTCAGTGACTGCGATATTACAAGTTGAGGTCAACAATGC  550
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  TTGGTGAGTCTTTCAGTGACTGCGATATTACAAGTTGAGATCAACACTGC  544

seq1  TTATATAAGGCAAACCAAACTGTACCTGTCTTTAGTGAAGAATAGAGAAG  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATATAAGGCAAACCAAAATGTACCTGTCTTTAGTGAAGAATAGAGAAG  594

seq1  TGGAACAAACCAATCCAAGGCTCAGTGCTAGTCTCCCACTGTCTGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAACCAATCCAAGGCTCAGTGCTAGTCTCCCACTGTCTGTGGGG  644

seq1  TCACATTTATACTCCTTCCTCACAGACCCTTCACATGTTTGCTATTTCAA  700
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGTACTCCTTCCTCACAGACCCTTCACATGTTTGCTATTTCAA  694

seq1  AACACCTGTTCACCTGTTTCTGACTTAGGAAAACTTTCTTTCACATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGTTCACCTGTTTCTGACTTAGGAAAACTTTCTTTCACATGTTT  744

seq1  GCTTTAGCAAGACATC---TTTTTTTTTTCACCTGTGTGCCCCAGCTAAA  797
      ||||||||||||||||   |||||||||||||||||||||||||||| ||
seq2  GCTTTAGCAAGACATCCTTTTTTTTTTTTCACCTGTGTGCCCCAGCTCAA  794

seq1  CATCATTTGACATAAGTAACTTCTCAAAGATATAGAC-TTTCAACTTCAC  846
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATCATTTGACATAAGTAACTTCTCAAAGATATAGACGTTTCAACTTCAC  844

seq1  CTTTGTGCTAGAGCAGTAAAATAGTTCATGAAAGGAAAATTATGTGGAAT  896
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTGTGCTAGAGCAGTAAAATAGTTCATGAAAGGAAAATTATGTGAAAT  894

seq1  TCTTTCTTCTGAATGGTTGAGTGAGTGTTGTTGGGTTTTTGTTTGTTTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTGAATGGTTGAGTGAGTGTTGTTGGGTTTTTGTTTGTTTGT  944

seq1  TTGT  950
      ||||
seq2  TTGT  948