BAC Information

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BAC

Clone NameB6Ng01-001G15
Chromosome12 (Build37)
Map Location 87,190,637 - 87,351,253
singlet/doubletdoublet
Overlap geneTtll5
Upstream geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001G15.bB6Ng01-001G15.g
ACCDH839740DH839741
length4801,152
definitionDH839740|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G15, 5' end.DH839741|Mus musculus domesticus DNA, BAC clone: B6Ng01-001G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,350,754 - 87,351,253)(87,190,637 - 87,191,775)
sequence
gaattcctgtatatttagtttacactttgagcaacaaactaacttatttt
cttgcaatcttttcctttctttgaccacaggagctctccaggttgctttg
taacttctgacatactccaccagttggctgtcttgcctgcttgagttttt
ttttttttttttttccatatgttggcagctaggtagtccaggcttatatt
ctttttttaattagatattttctttatttacatttcaaatgttttcccct
ttcctagtttcccctccaaaaatcctctatcccctgccccctgcccttgt
tccccacccacccactcccattctcccaagtgctgggattaaaggcatgc
gccaccactgccctcttttttttttttttttaagaatacttggagctgag
agatgctcacaattagaacacgactcttccagaaacttgggtccatccat
accacagacgtttccactatctgtaatcca
gaattccttgttggcatctttttcccacttcccacttttacattcttgct
gacttttggacttctgttctttggggaacaagaatcatgcctttttaaat
cttgtccttgcttgtttaccttttaagacagggtttcactatgtatttcc
agctggcctagataggactggctttgtagctcaggctggcctctgcctcc
cgagtgctgtgactaaaggatgctacttttgatgtcagagtttggtgaat
gaagcctttaatcccagcactcgggaggcagaggcaggcggatttctgag
ttcaaggccagcctggtctacagaatgagttccaggacagccagggctat
acagagaaaccctgtctcgaaaaaccaaaaaaaaacaaacaaacaaaaaa
agagtttggtgggccaggcgtggtggcgcacgcctttaatcccagcgctc
gggaggcagaggcaggcggatttctgagttcgaggccagcctggtctaca
aagtgagttccaggactgccagggctatacagagaaaccctgtctcaaaa
aaccaaaaaaaaaaaaaaaaaaagagtcacagtcttttttttccctttaa
gtttatactaataaaaaatatacataggtgtctaataaaaatacacacgg
gcatccattggagtctgaaagttggttgaactgctggtaagtaactgaag
tggaaacttaagggttctttggaaagtcagttatgttggatggtgttttg
ctgaggcaaacatgtgactctggatatgtttcactgaagcggacacaggt
gaaaggctaaggcagacttgggaagaaacatttcgatgcactagacagag
gagagagggtattgtgctccagcaagctggtaaaagggcacgtgattcgt
tgctaacgacacagatgcattggttccgccttacattgtgtagttagttg
agctgcatttgttgggatgccagaagagaagaaatgcaccagaactcctt
ctggtgatgtgctgcttgttttcttgctgcttcccctgtgacttgggctg
aattggcagatggatttccacttaagaacactcatgggcctgaaggccta
gactggtgtcgaagcaaggacacgtgaatgttttgcataaaaaagactca
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87350754_87351253
seq2: B6Ng01-001G15.b_42_521 (reverse)

seq1  TGGATTACAGATAGTTGTGAACTGTCATGTAGGTACTGGGAGTTGAACCC  50
      |||||||||||||||   |||  ||| ||| |||| ||   | || ||||
seq2  TGGATTACAGATAGT--GGAAACGTC-TGT-GGTA-TG---GATGGACCC  42

seq1  AAGTTTCTAGGAGTAGTCAGTGTTCTTAATTGCTGAGCCATCTCTCCAGC  100
      |||||||| |||  |||| |||||| |||||| |||| ||||||| ||||
seq2  AAGTTTCT-GGAAGAGTC-GTGTTC-TAATTG-TGAG-CATCTCT-CAGC  86

seq1  TCCAAGTTATTACTTTAAAAAAAAAAAAAAAAAAGAGGGCAGTGGTGGCG  150
      |||||| |||| |||   ||||||||||||||||||||||||||||||||
seq2  TCCAAG-TATT-CTT---AAAAAAAAAAAAAAAAGAGGGCAGTGGTGGCG  131

seq1  CATGCCTTTAATCCCAGCACTTGGGAGAATGGGAGTGGGTGGGTTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATGCCTTTAATCCCAGCACTTGGGAGAATGGGAGTGGGTGGG-TGGGGA  180

seq1  ACAAGGGCAGGGGGCAGGGGATAGAGGATTTTTGGAGGGGAAACTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCAGGGGGCAGGGGATAGAGGATTTTTGGAGGGGAAACTAGGAA  230

seq1  AGGGGAAAACATTTGAAATGTAAATAAAGAAAATATCTAATTAAAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAACATTTGAAATGTAAATAAAGAAAATATCTAATTAAAAAAAG  280

seq1  AATATAAGCCTGGACTACCTAGCTGCCAACATATGGAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGCCTGGACTACCTAGCTGCCAACATATGGAAAAAAAAAAAAAA  330

seq1  AAAAACTCAAGCAGGCAAGACAGCCAACTGGTGGAGTATGTCAGAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCAAGCAGGCAAGACAGCCAACTGGTGGAGTATGTCAGAAGTTA  380

seq1  CAAAGCAACCTGGAGAGCTCCTGTGGTCAAAGAAAGGAAAAGATTGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACCTGGAGAGCTCCTGTGGTCAAAGAAAGGAAAAGATTGCAAG  430

seq1  AAAATAAGTTAGTTTGTTGCTCAAAGTGTAAACTAAATATACAGGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTTAGTTTGTTGCTCAAAGTGTAAACTAAATATACAGGAATTC  480

seq1: chr12_87190637_87191775
seq2: B6Ng01-001G15.g_67_1218

seq1  GAATTCCTTGTTGGCATCTTTTTCCCACTTCCCACTTTTACATTCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTGGCATCTTTTTCCCACTTCCCACTTTTACATTCTTGCT  50

seq1  GACTTTTGGACTTCTGTTCTTTGGGGAACAAGAATCATGCCTTTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGGACTTCTGTTCTTTGGGGAACAAGAATCATGCCTTTTTAAAT  100

seq1  CTTGTCCTTGCTTGTTTACCTTTTAAGACAGGGTTTCACTATGTATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTGCTTGTTTACCTTTTAAGACAGGGTTTCACTATGTATTTCC  150

seq1  AGCTGGCCTAGATAGGACTGGCTTTGTAGCTCAGGCTGGCCTCTGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCTAGATAGGACTGGCTTTGTAGCTCAGGCTGGCCTCTGCCTCC  200

seq1  CGAGTGCTGTGACTAAAGGATGCTACTTTTGATGTCAGAGTTTGGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGTGACTAAAGGATGCTACTTTTGATGTCAGAGTTTGGTGAAT  250

seq1  GAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  300

seq1  TTCAAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTAT  350

seq1  ACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAACAAACAAACAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAACAAACAAACAAAAAA  400

seq1  AGAGTTTGGTGGGCCAGGCGTGGTGGCGCACGCCTTTAATCCCAGCGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGTGGGCCAGGCGTGGTGGCGCACGCCTTTAATCCCAGCGCTC  450

seq1  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  500

seq1  AAGTGAGTTCCAGGACTGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCCAGGACTGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA  550

seq1  AACCAAAAAAAAAAAAAAAAAAAGAGTCACAGTCTTTTTTTTCCCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAAAAAAAAAAAAAAGAGTCACAGTCTTTTTTTTCCCTTTAA  600

seq1  GTTTATACTAATAAAAAATATACATAGGTGTCTAATAAAAATACACACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACTAATAAAAAATATACATAGGTGTCTAATAAAAATACACACGG  650

seq1  GCATCCATTGGAGTCTGAAAGTTGGTTGAACTGCTGGTAAGTAACTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATTGGAGTCTGAAAGTTGGTTGAACTGCTGGTAAGTAACTGAAG  700

seq1  TGGAAACTTAAGGGTTCTTTGGAAAGTCAGTTATGTTGGATGGTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTTAAGGGTTCTTTGGAAAGTCAGTTATGTTGGATGGTGTTTTG  750

seq1  CTGAGGCAAACATGTGACTCTGGATATGTTTCACTGAAGCGGACACAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAAACATGTGACTCTGGATATGTTTCACTGAAGCGGACACAGGT  800

seq1  GAAAGGCTAAGGCAGACTTGGGAAGAAACATTTCGATGCACTAGACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTAAGGCAGACTTGGGAAGAAACATTTCGATGCACTAGACAGAG  850

seq1  GAGAGAGGGTATTGTGCTCCAGCAAGCTGGTAAAAGGGCACGTGATTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGTATTGTGCTCCAGCAAGCTGGTAAAAGGGCACGTGATTCGT  900

seq1  TGCTAACGACACAGATGCATTGG-TCCGCCTTACATTGTGTAGTTAGTTG  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTAACGACACAGATGCATTGGTTCCGCCTTACATTGTGTAGTTAGTTG  950

seq1  AGCTGCATTTGTTGGGATGCCAG-AGAG-AGAAATGCACCAGAAC-CCTT  996
      ||||||||||||||||||||||| |||| |||||||||||||||| ||||
seq2  AGCTGCATTTGTTGGGATGCCAGAAGAGAAGAAATGCACCAGAACTCCTT  1000

seq1  CTGGTGATGTGCTGCT--GTTTCTTGCTGCTTCCCC--TGACTTGGGCTG  1042
      ||||||||||||||||   |||||||||||||||||  ||||||||||||
seq2  CTGGTGATGTGCTGCTTGTTTTCTTGCTGCTTCCCCTGTGACTTGGGCTG  1050

seq1  -ATTGGCAGAGTGATGTCAGCTGA--GACACTCATGGG-CTGA--GGCAG  1086
       |||||||||  ||| ||  || |   ||||||||||| ||||  | |  
seq2  AATTGGCAGATGGATTTCCACTTAAGAACACTCATGGGCCTGAAGGCCTA  1100

seq1  GACAGGTGCCGAGGCAAGGACACGTG-ATG-TTTGCATAGAAAAAAAGAC  1134
      ||| |||| ||| ||||||||||||| ||| |||||||   |||||||||
seq2  GACTGGTGTCGAAGCAAGGACACGTGAATGTTTTGCAT---AAAAAAGAC  1147

seq1  TCAGA  1139
      |||||
seq2  TCAGA  1152