BAC Information

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BAC

Clone NameB6Ng01-001H22
Chromosome12 (Build37)
Map Location 109,063,841 - 109,115,614
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
Downstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001H22.bB6Ng01-001H22.g
ACCDH839798DH839799
length1,105769
definitionDH839798|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H22, 5' end.DH839799|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,114,492 - 109,115,614)(109,063,841 - 109,064,607)
sequence
gaattccaggctgtccagggctacatagacccatcttaagaacaggagag
attgagttgtggtagggagatgggacgactgcaaagggtaactgtgtctc
tctgagactagactattcctgaacatgggtgttacagccaacgttgattg
ttagcctgatgagatctagtgtcacctgggagacaaacgtctggctaagt
ctgtgaggagacttctggattgggttagcagagacaggaagacccacctt
aattgcaggtggtattgctcttcgggctggggtcccagactatatagaag
ggcagaggcaggctgagcacagggcctgatacctctctgcttcctgagtg
cagaggcagtgtgaccagctttccacccctggccccctgccaagccttcc
ccaccacagtggacagtcttccttcagactgtaagccaaaataaactctt
ccaccctgaagttgcgttctgttgggcagtttgtcctagcagtgaggaga
gcacccgtacagtgggcacactccaccatcggctgctctcctctgcaggc
agccgctcacgcttctacttcctgcctggaacggaagctgcatgcgagcc
ttacctgaagccaaacagatgatgcaggatacactccaacttcaagggct
cctgacaaacttggctgtctttctgtattatcttttttgcattattattt
ctagctacagaaaacatgctagtttttttttttttctctgctgatcttag
cgtccaaggaaacctaggtgggcttcattcatgctcagagtacagtagac
aggcgtacagacaggcgtacagaggggcccctcgcgagggggagggggcg
gggaggcaattgacctgttcaaagctgcggctgagctggatttacaacca
gccagctgtctttcccaaggaccagagttggatatgtgagtctgtgtttt
ttgcctgtttatagtacgtaccttccttctgcagggacttgttcattaat
actgctgggtgccgagtgctatacagacttctttaagacttgggctcttg
gcaaagtgattctgttactgaattacccgattttttacttcaatgttatc
agagc
gaattcctccttcccagggaccacgctgcaattagcctctgggtttggca
tcttgtgccaggtgatggtgatggtggcccagagctcaagcagaaagggt
gttgtctgtgactgattggtcatgtctgccgctgaggtaagactgcaatt
ggcaactgtggactcacccaggccttagatcagtccacatccacatcaat
tagagaagctgggtttttaatcgaaagattctgcaaggatgaagcttata
tcctgctgccaatacctctctacccagcccctctggtctacctttgtctg
ccctccagctaggtgggttctgcctctagggaaaagactacttcaagttc
cttcccagacccccaccagcacacagcccaaggtcctcgggagttcttgt
ggggaacattagcttatctaaatatggtgtggcaatggatccataaggtg
ggtgggcggacatgcaaatggacacaagtctcagaaaacactcccccacc
tgtcccacagagaagaagagaactgggaaagactcctccagccccgtggg
tggtgttcatagcacatgggtggggagcgtgccatggccatcttttccag
ctgtggtttggcacattaacagattatccacaaaatataggtgtgaggaa
attaccctacaaaataggatggaccagcctcccccttttccaaaagaaaa
ttgttcaatcacaaagagttttttgttttgggggatttttggtttttgat
gttattagttgttgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_109114492_109115614
seq2: B6Ng01-001H22.b_44_1148 (reverse)

seq1  GCTC-GATAACATTTTAAATGTTAAAAAATGGGTAATTTTCAGTAAAAAA  49
      |||| |||||||||    | || |||||  ||||||  ||||||      
seq2  GCTCTGATAACATT---GAAGTAAAAAATCGGGTAA--TTCAGT------  39

seq1  AAAAAAAAATCAACTTTGCC-AGAGCCCAAGTC-TAAAGGAGTCCTGTAT  97
        || | |||| |||||||| |||||||||||| ||||| ||| ||||||
seq2  --AACAGAATC-ACTTTGCCAAGAGCCCAAGTCTTAAAGAAGT-CTGTAT  85

seq1  AGCACTCGGGCACCCAGCCAGTATTAATGAACAAGTCCCTGCAGAAGGAA  147
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCACTC-GGCACCCAG-CAGTATTAATGAACAAGTCCCTGCAGAAGGAA  133

seq1  GGGTACGTACTATTAAAACAGGGCAAAAAACACAGACTTCACATATCCAA  197
       ||||||||||||  ||||| |||||||||||||||| ||||||||||||
seq2  -GGTACGTACTAT--AAACA-GGCAAAAAACACAGAC-TCACATATCCAA  178

seq1  CTCTGGTCCTTGGGAAAGACAGCTGGCTGGTTGTAAATCCAGCTCAGCCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCCTTGGGAAAGACAGCTGGCTGGTTGTAAATCCAGCTCAGCCG  228

seq1  CAGCTTTGAACAGGTCAATTGCCTCCCCGCCCCCTCCCCCTCGCG-GGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGCTTTGAACAGGTCAATTGCCTCCCCGCCCCCTCCCCCTCGCGAGGGG  278

seq1  CCCCTCTGTACGCCTGTCTGTACGCCTGTCTACTGTACTCTGAGCATGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGTACGCCTGTCTGTACGCCTGTCTACTGTACTCTGAGCATGAA  328

seq1  TGAAGCCCACCTAGGTTTCCTTGGACGCTAAGATCAGCAGAGAAAAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCACCTAGGTTTCCTTGGACGCTAAGATCAGCAGAGAAAAAAAA  378

seq1  AAAAACTAGCATGTTTTCTGTAGCTAGAAATAATAATGCAAAAAAGATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAGCATGTTTTCTGTAGCTAGAAATAATAATGCAAAAAAGATAA  428

seq1  TACAGAAAGACAGCCAAGTTTGTCAGGAGCCCTTGAAGTTGGAGTGTATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAGACAGCCAAGTTTGTCAGGAGCCCTTGAAGTTGGAGTGTATC  478

seq1  CTGCATCATCTGTTTGGCTTCAGGTAAGGCTCGCATGCAGCTTCCGTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCATCTGTTTGGCTTCAGGTAAGGCTCGCATGCAGCTTCCGTTCC  528

seq1  AGGCAGGAAGTAGAAGCGTGAGCGGCTGCCTGCAGAGGAGAGCAGCCGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGTAGAAGCGTGAGCGGCTGCCTGCAGAGGAGAGCAGCCGAT  578

seq1  GGTGGAGTGTGCCCACTGTACGGGTGCTCTCCTCACTGCTAGGACAAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTGTGCCCACTGTACGGGTGCTCTCCTCACTGCTAGGACAAACT  628

seq1  GCCCAACAGAACGCAACTTCAGGGTGGAAGAGTTTATTTTGGCTTACAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACAGAACGCAACTTCAGGGTGGAAGAGTTTATTTTGGCTTACAGT  678

seq1  CTGAAGGAAGACTGTCCACTGTGGTGGGGAAGGCTTGGCAGGGGGCCAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAAGACTGTCCACTGTGGTGGGGAAGGCTTGGCAGGGGGCCAGG  728

seq1  GGTGGAAAGCTGGTCACACTGCCTCTGCACTCAGGAAGCAGAGAGGTATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAGCTGGTCACACTGCCTCTGCACTCAGGAAGCAGAGAGGTATC  778

seq1  AGGCCCTGTGCTCAGCCTGCCTCTGCCCTTCTATATAGTCTGGGACCCCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGTGCTCAGCCTGCCTCTGCCCTTCTATATAGTCTGGGACCCCA  828

seq1  GCCCGAAGAGCAATACCACCTGCAATTAAGGTGGGTCTTCCTGTCTCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAAGAGCAATACCACCTGCAATTAAGGTGGGTCTTCCTGTCTCTGC  878

seq1  TAACCCAATCCAGAAGTCTCCTCACAGACTTAGCCAGACGTTTGTCTCCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAATCCAGAAGTCTCCTCACAGACTTAGCCAGACGTTTGTCTCCC  928

seq1  AGGTGACACTAGATCTCATCAGGCTAACAATCAACGTTGGCTGTAACACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACACTAGATCTCATCAGGCTAACAATCAACGTTGGCTGTAACACC  978

seq1  CATGTTCAGGAATAGTCTAGTCTCAGAGAGACACAGTTACCCTTTGCAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAGGAATAGTCTAGTCTCAGAGAGACACAGTTACCCTTTGCAGT  1028

seq1  CGTCCCATCTCCCTACCACAACTCAATCTCTCCTGTTCTTAAGATGGGTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCATCTCCCTACCACAACTCAATCTCTCCTGTTCTTAAGATGGGTC  1078

seq1  TATGTAGCCCTGGACAGCCTGGAATTC  1123
      |||||||||||||||||||||||||||
seq2  TATGTAGCCCTGGACAGCCTGGAATTC  1105

seq1: chr12_109063841_109064607
seq2: B6Ng01-001H22.g_70_838

seq1  GAATTCCTCCTTCCCAGGGACCACGCTGCAATTAGCCTCTGGGTTTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTCCCAGGGACCACGCTGCAATTAGCCTCTGGGTTTGGCA  50

seq1  TCTTGTGCCAGGTGATGGTGATGGTGGCCCAGAGCTCAAGCAGAAAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCCAGGTGATGGTGATGGTGGCCCAGAGCTCAAGCAGAAAGGGT  100

seq1  GTTGTCTGTGACTGATTGGTCATGTCTGCCGCTGAGGTAAGACTGCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGTGACTGATTGGTCATGTCTGCCGCTGAGGTAAGACTGCAATT  150

seq1  GGCAACTGTGGACTCACCCAGGCCTTAGATCAGTCCACATCCACATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGTGGACTCACCCAGGCCTTAGATCAGTCCACATCCACATCAAT  200

seq1  TAGAGAAGCTGGGTTTTTAATCGAAAGATTCTGCAAGGATGAAGCTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGCTGGGTTTTTAATCGAAAGATTCTGCAAGGATGAAGCTTATA  250

seq1  TCCTGCTGCCAATACCTCTCTACCCAGCCCCTCTGGTCTACCTTTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGCCAATACCTCTCTACCCAGCCCCTCTGGTCTACCTTTGTCTG  300

seq1  CCCTCCAGCTAGGTGGGTTCTGCCTCTAGGGAAAAGACTACTTCAAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGCTAGGTGGGTTCTGCCTCTAGGGAAAAGACTACTTCAAGTTC  350

seq1  CTTCCCAGACCCCCACCAGCACACAGCCCAAGGTCCTCGGGAGTTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGACCCCCACCAGCACACAGCCCAAGGTCCTCGGGAGTTCTTGT  400

seq1  GGGGAACATTAGCTTATCTAAATATGGTGTGGCAATGGATCCATAAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACATTAGCTTATCTAAATATGGTGTGGCAATGGATCCATAAGGTG  450

seq1  GGTGGGCGGACATGCAAATGGACACAAGTCTCAGAAAACACTCCCCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCGGACATGCAAATGGACACAAGTCTCAGAAAACACTCCCCCACC  500

seq1  TGTCCCACAGAGAAGAAGAGAACTGGGAAAGACTCCTCCAGCCCCGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACAGAGAAGAAGAGAACTGGGAAAGACTCCTCCAGCCCCGTGGG  550

seq1  TGGTGTTCATAGCACATGGGTGGGGAGCGTGCCATGGCCATCTTTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCATAGCACATGGGTGGGGAGCGTGCCATGGCCATCTTTTCCAG  600

seq1  CTGTGGTTTGGCACATTAACAGATTATCCACAAAATATAGGTGTGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTTGGCACATTAACAGATTATCCACAAAATATAGGTGTGAGGAA  650

seq1  ATTACCCTACAAAATAGGATGGACCAGC--CCCCCCTTTCCAAAAGAAAA  698
      ||||||||||||||||||||||||||||  ||||| ||||||||||||||
seq2  ATTACCCTACAAAATAGGATGGACCAGCCTCCCCCTTTTCCAAAAGAAAA  700

seq1  TTGTTCAATCACAAAGAGTTTTTTGTTTTGGGGGATTTTTGGTTTTTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAATCACAAAGAGTTTTTTGTTTTGGGGGATTTTTGGTTTTTGAT  750

seq1  GTTATTAGTTGTTGTTGTT  767
      |||||||||||||||||||
seq2  GTTATTAGTTGTTGTTGTT  769