BAC Information

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BAC

Clone NameB6Ng01-001K15
Chromosome12 (Build37)
Map Location 5,891,623 - 5,925,174
singlet/doubletdoublet
Overlap geneLOC100042095
Upstream geneUbxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292
Downstream geneLOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001K15.bB6Ng01-001K15.g
ACCDH839920DH839921
length1,180853
definitionDH839920|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K15, 5' end.DH839921|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,891,623 - 5,892,823)(5,924,322 - 5,925,174)
sequence
gaattcttcaggaagcagcataagaaagtgactcaagaatttgtgaccaa
gtgtggggtagctctatatgacaaggactcaacccttctttgataaccct
gataatggaggaaggccaccatcctttataagcttgcaaaggcaagaagg
aaaatggattttacccaaagcttccagaaaatagatagcctttaatttta
gcctaaagagatattttccaaagttctgacccacccccccgccagctata
aaataagtttgtggtttttaaaaccctaaatttgtgtttacttttatagt
tgcaataggaaactagcattgcctttcttctgcccctaaaatcctctctc
ctaaaaaagaaaattacattcggaggatttatttaacctaatctccaact
tttgcaactccgatacccacagtatttaaatacagctccagagctgctgg
gagagatataacagaagaaactgcttcacagctgcatgtgtaaatgctgg
aactatccaagggaggcttgaaacagtgattctaacctcgatgaccaaaa
ccaagaaataggattgattcagaactctactatgcttgataagccaaaga
tctgggtgaccccactttggagtttagggttccattaagggctccacatt
cctcctcttcatgacttgcttggctaattcagtagcaagagtggcctttg
gatgagaattggcaccttttatctttctgcccatctcttcctcttcctgt
tgtaggatgaaggctgcagtgagaagaaacgctgaggacacttctgttat
tgaattataaggagccatgcagaccatctgtaggaccaggggaaagaata
tatatttaagaaacaggtttaaaacctgatgttagaggaaggtaagtcat
gttaaaaattagatatttactttatttccatttcaaatgttgccccttcc
ctggttaccctctgaaaacccctctgcttcctggccctgtcgttccatac
actgggcatagaacttcataggatcaaggcatctcctcccattgaagatc
gctagtcatcatctctgctacataatgcagtgagagcatgagtccacaca
tgtgtagtcttctgtgggcgaattagcccctggagctctgggtactgatg
taattgtggttctcctatgagggtgctaac

gaattcctatgagaagactctattgcatgtgactcagcatgacttttttt
gtgtgtgcactgctctgttcaccagatatacacagtggtcacttagggtg
tagaaaggaaatataatactctctgattagctaattttccctagtgttac
tgctcattgagtttctgccctggagcccaaacacagctctggctttcact
gctgtgcttgattctgttttctgtgaatgatctacctgcctctgatccca
gtggtcaaaggaaagaatagattctttctaaataagagagagtactagtc
aatgcaacaattcctgggattctaaagctattataaaagggggaagtttg
tgagatctgtctaggaagcttgtatttgcaacctgcaatgacaacaagca
tcagaaaatggtatgcttgtatgaatgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgttaaagctatttttaaaactatttttgtgatatttgtctaggcaa
tatgtatttgcaatctttaatgctctgcagcatcagaatgtgtgtatgtg
tgtgtttgtgtgtatatttgtgtttctttgtgtatgtgccttgttttgtg
tgagtgcatgtgtgtgcatgtgtccaaacaatgatggtgtcagctttcgg
atgagggacttagggaataagagatattacaagcttcgctagagaccacc
gaacctcgaggattcttctcagatatttaatttctgaagaaagatgctaa
gccttgaggattcctcgttgtttcaaggttcttcctttcctcctcctctc
acatttttttttctaaaccagaacatcaaagtcttgcaggctaaggacac
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5891623_5892823
seq2: B6Ng01-001K15.b_43_1222

seq1  GAATTCTTCAGGAAGCAGCATAAGAAAGTGACTCAAGAATTTGTGACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGAAGCAGCATAAGAAAGTGACTCAAGAATTTGTGACCAA  50

seq1  GTGTGGGGTAGCTCTATATGACAAGGACTCAACCCTTCTTTGATAACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGTAGCTCTATATGACAAGGACTCAACCCTTCTTTGATAACCCT  100

seq1  GATAATGGAGGAAGGCCACCATCCTTTATAAGCTTGCAAAGGCAAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGAGGAAGGCCACCATCCTTTATAAGCTTGCAAAGGCAAGAAGG  150

seq1  AAAATGGATTTTACCCAAAGCTTCCAGAAAATAGATAGCCTTTAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATTTTACCCAAAGCTTCCAGAAAATAGATAGCCTTTAATTTTA  200

seq1  GCCTAAAGAGATATTTTCCAAAGTTCTGACCCACCCCCCCGCCAGCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGAGATATTTTCCAAAGTTCTGACCCACCCCCCCGCCAGCTATA  250

seq1  AAATAAGTTTGTGGTTTTTAAAACCCTAAATTTGTGTTTACTTTTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTTGTGGTTTTTAAAACCCTAAATTTGTGTTTACTTTTATAGT  300

seq1  TGCAATAGGAAACTAGCATTGCCTTTCTTCTGCCCCTAAAATCCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAGGAAACTAGCATTGCCTTTCTTCTGCCCCTAAAATCCTCTCTC  350

seq1  CTAAAAAAGAAAATTACATTCGGAGGATTTATTTAACCTAATCTCCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAGAAAATTACATTCGGAGGATTTATTTAACCTAATCTCCAACT  400

seq1  TTTGCAACTCCGATACCCACAGTATTTAAATACAGCTCCAGAGCTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACTCCGATACCCACAGTATTTAAATACAGCTCCAGAGCTGCTGG  450

seq1  GAGAGATATAACAGAAGAAACTGCTTCACAGCTGCATGTGTAAATGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATATAACAGAAGAAACTGCTTCACAGCTGCATGTGTAAATGCTGG  500

seq1  AACTATCCAAGGGAGGCTTGAAACAGTGATTCTAACCTCGATGACCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCAAGGGAGGCTTGAAACAGTGATTCTAACCTCGATGACCAAAA  550

seq1  CCAAGAAATAGGATTGATTCAGAACTCTACTATGCTTGATAAGCCAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAATAGGATTGATTCAGAACTCTACTATGCTTGATAAGCCAAAGA  600

seq1  TCTGGGTGACCCCACTTTGGAGTTTAGGGTTCCATTAAGGGCTCCACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGACCCCACTTTGGAGTTTAGGGTTCCATTAAGGGCTCCACATT  650

seq1  CCTCCTCTTCATGACTTGCTTGGCTAATTCAGTAGCAAGAGTGGCCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCATGACTTGCTTGGCTAATTCAGTAGCAAGAGTGGCCTTTG  700

seq1  GATGAGAATTGGCACCTTTTATCTTTCTGCCCATCTCTTCCTCTTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAATTGGCACCTTTTATCTTTCTGCCCATCTCTTCCTCTTCCTGT  750

seq1  TGTAGGATGAAGGCTGCAGTGAGAAGAAACGCTGAGGACACTTCTGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATGAAGGCTGCAGTGAGAAGAAACGCTGAGGACACTTCTGTTAT  800

seq1  TGAATTATAAGGAGCCATGCAGACCATCTGTAGGACCAGGGGAAAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATAAGGAGCCATGCAGACCATCTGTAGGACCAGGGGAAAGAATA  850

seq1  TATATTTAAGAAACAGGTTTAAAACCTGATGTTAGAGGAAGGTAAGTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAGAAACAGGTTTAAAACCTGATGTTAGAGGAAGGTAAGTCAT  900

seq1  GTTAAAAAATTAGATATTTACTTTATTTCCATTTCAAATGTTGCCCCCTT  950
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTT-AAAAATTAGATATTTACTTTATTTCCATTTCAAATGTTG-CCCCTT  948

seq1  CCCTGGTTACCCCTCTGAAAAACCCCTCTGCTTCCTGGCCCTGTCGTTCC  1000
      ||||||||| ||||||| |||||||||||||||||||||||||||||| |
seq2  CCCTGGTTA-CCCTCTG-AAAACCCCTCTGCTTCCTGGCCCTGTCGTT-C  995

seq1  CATACACTGGGGCATAGAACCTTCATAGGATCAAGGGCATCTCCTCCCAT  1050
      |||||||| |||||||||| |||||||||||||| |||||||||||||||
seq2  CATACACT-GGGCATAGAA-CTTCATAGGATCAA-GGCATCTCCTCCCAT  1042

seq1  TGAAGATCGGCTAGGTCATCCATCCTCTGCTACAT-ATGCAGTGAGAGCC  1099
      |||||||| |||| ||||| ||| ||||||||||| |||||||||||| |
seq2  TGAAGATC-GCTA-GTCAT-CAT-CTCTGCTACATAATGCAGTGAGAG-C  1087

seq1  ATGAGTCCCACCATGTGTAGTCTTCTGTTGGCGATTTAGCCCCTGGGAGC  1149
      ||||||||   ||||||||||||||||| ||||| ||||||||| |||||
seq2  ATGAGTCCACACATGTGTAGTCTTCTGTGGGCGAATTAGCCCCT-GGAGC  1136

seq1  TCTGGGGGTACTGGTTGGTTAATATTGTTGTTCCTCCTATGAGGCTGCTA  1199
      |||  |||||||| |  ||    ||||| ||| ||||||||||| |||||
seq2  TCT--GGGTACTGAT--GT---AATTGTGGTT-CTCCTATGAGGGTGCTA  1178

seq1  AC  1201
      ||
seq2  AC  1180


seq1: chr12_5924322_5925174
seq2: B6Ng01-001K15.g_68_920 (reverse)

seq1  CCAGTGTCCCTAGCCTGCATGACTTTGATTGTTTCTGGTTTAGAAAAAAA  50
      ||||||||| ||||||||| |||||||||   ||||||||||||||||||
seq2  CCAGTGTCCTTAGCCTGCAAGACTTTGAT--GTTCTGGTTTAGAAAAAAA  48

seq1  AATGTGAGAGGAGGAGGAAGGGAAGAACCTTGAAACAACGAGGAATCCTC  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGTGAGAGGAGGAGGAAAGGAAGAACCTTGAAACAACGAGGAATCCTC  98

seq1  AAGGCTTAGCATCTTTCTTCAGAAATTAAATATCTGAGAAGAATCCTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAGCATCTTTCTTCAGAAATTAAATATCTGAGAAGAATCCTCGA  148

seq1  GGTTCGGTGGTCTCTAGCGAAGCTTGTAATATCTCTTATTCCCTAAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGTGGTCTCTAGCGAAGCTTGTAATATCTCTTATTCCCTAAGTCC  198

seq1  CTCATCCG-AAGCTGACACCATCATTGTTTGGACACATGCACACACATGC  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCGAAAGCTGACACCATCATTGTTTGGACACATGCACACACATGC  248

seq1  ACTCACAC-AAACAAGGCACATACACAAAGAAACACAAATATACACACAA  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACAAAACAAGGCACATACACAAAGAAACACAAATATACACACAA  298

seq1  ACACACACATACACACATTCTGATGCTGCAGAGCATTAAAGATTGCAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACACACATTCTGATGCTGCAGAGCATTAAAGATTGCAAAT  348

seq1  ACATATTGCCTAGACAAATATCACAAAAATAGTTTTAAAAATAGCTTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGCCTAGACAAATATCACAAAAATAGTTTTAAAAATAGCTTTAA  398

seq1  CACACACACACACACACACACACACACACATTCATACAAGCATACCATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATTCATACAAGCATACCATTT  448

seq1  TCTGATGCTTGTTGTCATTGCAGGTTGCAAATACAAGCTTCCTAGACAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCTTGTTGTCATTGCAGGTTGCAAATACAAGCTTCCTAGACAGA  498

seq1  TCTCACAAACTTCCCCCTTTTATAATAGCTTTAGAATCCCAGGAATTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAACTTCCCCCTTTTATAATAGCTTTAGAATCCCAGGAATTGTT  548

seq1  GCATTGACTAGTACTCTCTCTTATTTAGAAAGAATCTATTCTTTCCTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGACTAGTACTCTCTCTTATTTAGAAAGAATCTATTCTTTCCTTTG  598

seq1  ACCACTGGGATCAGAGGCAGGTAGATCATTCACAGAAAACAGAATCAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGGATCAGAGGCAGGTAGATCATTCACAGAAAACAGAATCAAGC  648

seq1  ACAGCAGTGAAAGCCAGAGCTGTGTTTGGGCTCCAGGGCAGAAACTCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGAAAGCCAGAGCTGTGTTTGGGCTCCAGGGCAGAAACTCAAT  698

seq1  GAGCAGTAACACTAGGGAAAATTAGCTAATCAGAGAGTATTATATTTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTAACACTAGGGAAAATTAGCTAATCAGAGAGTATTATATTTCCT  748

seq1  TTCTACACCCTAAGTGACCACTGTGTATATCTGGTGAACAGAGCAGTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACCCTAAGTGACCACTGTGTATATCTGGTGAACAGAGCAGTGCA  798

seq1  CACACAAAAAAAGTCATGCTGAGTCACATGCAATAGAGTCTTCTCATAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAAAAGTCATGCTGAGTCACATGCAATAGAGTCTTCTCATAGG  848

seq1  AATTC  853
      |||||
seq2  AATTC  853


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