BAC Information

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BAC

Clone NameB6Ng01-001L10
Chromosome12 (Build37)
Map Location 93,541,075 - 93,542,261
singlet/doubletsinglet
Overlap genenone
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L10.bB6Ng01-001L10.g
ACCDH839954DH839955
length1,165743
definitionDH839954|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L10, 5' end.DH839955|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacccgaagttgggttttgttcttttcgatagtggggaaggataa
gagagagacaagattctgataaataatttatgaagaagaatgcttcactg
atcagatttggtgatgaaaaaaatttctttgaaaacccatgagtaacatt
cttaatggaaattatctgcacttctcctgggtcggcatttttttttcctg
ctattagtttgatttcggcttgacagtctccttcctgcacaaatgtagca
acaaacacaacggaaaagcctttctacatgattattttctaaagtaataa
gacaacgtgtgtgacctgaaaaatcagcccctcccacgtgtcaggtaagg
aggtggcttgatgatactttaaaagccatcttgtgcttcctcctgccact
cagtcactccttctggggtctagggcgggcttttgctgccatctactggt
acgtcttgcaagacaatcggacgcttctgaaaaggagagaattggaaaaa
atgggggagggggcttattctgtaagaaaatccaattccggcagaaatga
atttctacgccgagtcacagagccttaagtattttgtgctagagaatgtt
taatagcgaccctcttgtgcaacccatggaaagattttttttctctcttt
ttcattccctggacaagtgtctgaactcatctacatgcacatgtcattct
ccagaagctcaaacggaggaggaatatcgtggcggtttgattacatagat
tgctaagattactcctaactcctcttgctgcctgaaatttctagcagact
ttttaaaaccactttccccaaatgtagaatatgaaaccatgacatttctt
tcatagcatcatacagctatccataaactcgctgatatgctggcatgaag
attaaatgcggtatgtgcttagcatttcttgcaaacgcacatgagctttt
ataaagaccagctgttcccatcacatgacatgactataattccatagttg
tggcacttaagaacaaactacccagaataatgacactatggcaatgagcg
accttaaatttataattcaatgttagtcctcagagatgacgtaaatgata
agagtaagtcagtattagtctacatattcagccactgtttatgagattgt
agaaaagactcagtt

gaattctgtgtattctgtatgttttaatttttattttatattattattat
taattattattattattagctaatatccacttattagtgagtgcatacca
tgcatgtacttttaggtctgagttacctcactcaggatgatattttctag
tttcatccataattgtttctgtctgaaagaattacagggatggaaatgga
gaagaacctgagggaaagaaggtccagtgataggtccaaattgagatcca
gctcaaggggaggtcccaaggcctgacactattactgaggctatggagca
ctcacataaagggatctatcatgactcccctctgaaagacccaacaagca
gctgaaagagtcagatacagttatttgcacccaaccaatggacagaagca
gctgacccctgttagcttccctgttgaattagggaaggctgaaagaagct
gaggtgagggcgattctgtaggaggaccagcagtattaattaatctggac
cctcgagatctttcaaacactggaccacgaaacaggcagcatacaccagc
taatatgaggcccttaacacacatacaatcgaggacttctgggtctgtgt
tcattcagagatgatgcacctaaccctcaagactggggaccccagggagt
ttataggtcaggtggggtgggaggtaggggcatccacctggagacgggtt
agggtggggagtcagtgtgagatgtggagcagttggagggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93541075_93542261
seq2: B6Ng01-001L10.b_44_1208 (reverse)

seq1  AACTGAGTCTTTTCTACTATTCTTCTATAAAAACCAGT-GCTGAAATATG  49
      ||||||||||||||||| | |||   |||||   |||| |||| ||||||
seq2  AACTGAGTCTTTTCTAC-AATCT--CATAAA---CAGTGGCTG-AATATG  43

seq1  TAGACCTATATACCTGACTTACTCTTTATCATTTACGTTCATCCTTCCTG  99
      |||||  |||   ||||||||||| |||||||||||| |||||  |    
seq2  TAGACTAATA---CTGACTTACTC-TTATCATTTACG-TCATCTCT----  84

seq1  GAGGACCAAACATTGAATTTATAATATTTAAGGGTCGCTCATTGCCATAG  149
      ||||| | ||||||||| |||||| |||||| ||||||||||||||||||
seq2  GAGGA-CTAACATTGAA-TTATAA-ATTTAA-GGTCGCTCATTGCCATAG  130

seq1  TGTCATTATTCTGGGTAGTTTTGTTCTTAAGTGCCACAACTATGGAATTA  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTCATTATTCTGGGTAG-TTTGTTCTTAAGTGCCACAACTATGGAATTA  179

seq1  TTAGTCATTGTCATGTGATGGGAACAGCTGGTCTTTATTAAAAGCTCATG  249
       |||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  -TAGTCA-TGTCATGTGATGGGAACAGCTGGTCTTTA-TAAAAGCTCATG  226

seq1  TGCGTTTGCAAGAAATGCTAAGCACATACCGCATTTAATCTTCATGCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTGCAAGAAATGCTAAGCACATACCGCATTTAATCTTCATGCCAG  276

seq1  CATATCAGCGAGTTTATGGATAGCTGTATGATGCTATG-AAGAAATGTCA  348
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATATCAGCGAGTTTATGGATAGCTGTATGATGCTATGAAAGAAATGTCA  326

seq1  TGGTTTCATATTCTACATTTGGGGAAAGTGGTTTTAAAAAGTCTGCTAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCATATTCTACATTTGGGGAAAGTGGTTTTAAAAAGTCTGCTAGA  376

seq1  AATTTCAGGCAGCAAGAGGAGTTAGGAGTAATCTTAGCAATCTATGTAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGCAGCAAGAGGAGTTAGGAGTAATCTTAGCAATCTATGTAAT  426

seq1  CAAACCGCCACGATATTCCTCCTCCGTTTGAGCTTCTGGAGAATGACATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCGCCACGATATTCCTCCTCCGTTTGAGCTTCTGGAGAATGACATG  476

seq1  TGCATGTAGATGAGTTCAGACACTTGTCCAGGGAATGAAAAAGAGAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTAGATGAGTTCAGACACTTGTCCAGGGAATGAAAAAGAGAGAAA  526

seq1  AAAAATCTTTCCATGGGTTGCACAAGAGGGTCGCTATTAAACATTCTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTTCCATGGGTTGCACAAGAGGGTCGCTATTAAACATTCTCTA  576

seq1  GCACAAAATACTTAAGGCTCTGTGACTCGGCGTAGAAATTCATTTCTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAATACTTAAGGCTCTGTGACTCGGCGTAGAAATTCATTTCTGCC  626

seq1  GGAATTGGATTTTCTTACAGAATAAGCCCCCTCCCCCATTTTTTCCAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGATTTTCTTACAGAATAAGCCCCCTCCCCCATTTTTTCCAATT  676

seq1  CTCTCCTTTTCAGAAGCGTCCGATTGTCTTGCAAGACGTACCAGTAGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTTCAGAAGCGTCCGATTGTCTTGCAAGACGTACCAGTAGATG  726

seq1  GCAGCAAAAGCCCGCCCTAGACCCCAGAAGGAGTGACTGAGTGGCAGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAAGCCCGCCCTAGACCCCAGAAGGAGTGACTGAGTGGCAGGAG  776

seq1  GAAGCACAAGATGGCTTTTAAAGTATCATCAAGCCACCTCCTTACCTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAAGATGGCTTTTAAAGTATCATCAAGCCACCTCCTTACCTGAC  826

seq1  ACGTGGGAGGGGCTGATTTTTCAGGTCACACACGTTGTCTTATTACTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGGAGGGGCTGATTTTTCAGGTCACACACGTTGTCTTATTACTTTA  876

seq1  GAAAATAATCATGTAGAAAGGCTTTTCCGTTGTGTTTGTTGCTACATTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATCATGTAGAAAGGCTTTTCCGTTGTGTTTGTTGCTACATTTG  926

seq1  TGCAGGAAGGAGACTGTCAAGCCGAAATCAAACTAATAGCAGGAAAAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGGAGACTGTCAAGCCGAAATCAAACTAATAGCAGGAAAAAAA  976

seq1  AATGCCGACCCAGGAGAAGTGCAGATAATTTCCATTAAGAATGTTACTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCGACCCAGGAGAAGTGCAGATAATTTCCATTAAGAATGTTACTCA  1026

seq1  TGGGTTTTCAAAGAAATTTTTTTCATCACCAAATCTGATCAGTGAAGCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCAAAGAAATTTTTTTCATCACCAAATCTGATCAGTGAAGCAT  1076

seq1  TCTTCTTCATAAATTATTTATCAGAATCTTGTCTCTCTCTTATCCTTCCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCATAAATTATTTATCAGAATCTTGTCTCTCTCTTATCCTTCCC  1126

seq1  CACTATCGAAAAGAACAAAACCCAACTTCGGGTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||
seq2  CACTATCGAAAAGAACAAAACCCAACTTCGGGTGAATTC  1165


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