BAC Information

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BAC

Clone NameB6Ng01-001M22
Chromosome12 (Build37)
Map Location 9,890,792 - 9,985,598
singlet/doubletdoublet
Overlap genenone
Upstream geneLaptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
Downstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M22.bB6Ng01-001M22.g
ACCDH840025DH840026
length1,2021,183
definitionDH840025|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M22, 5' end.DH840026|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,890,792 - 9,892,013)(9,984,437 - 9,985,598)
sequence
gaattcttccattagtgttggagatctaaattgttgcttaactatgcccc
catcatcttcaatttatctattcaaaaattttaaaaaatatcaattctag
aaagccctgtctgatcatatctgatctgtctgatcacgtaaatacatgaa
agtatttactttcatagtattcataaattttaaagttatccttagccctt
ttatctgtttaatatgaacaaaaataatattttcatgatgaatagccttt
tcctttggaatccttatttgattccttttctttaacttcaagaaaaatat
cggtgaagcttgaaggtctttgtaatagtagtaagaggcaaagaattcca
ggagacatgacagtggccttttttagtgtaacagctgtgagccaccaata
cctactccattctgctgtttggcatctaagggaaatttttctattgccat
tctctctcctacatggtcttacagacaagtgcaggtggtttggtctgcac
tcctcaaggggaattggtaatgtcaacctttagtcacatttctactttct
agaaaacatgataggagagagaaaaaaatgagaattgagcaattgggaga
aggctcaagttgtcatcattttaatgcctgttgcgttgttaattaaaata
aaattgtatcactttacttgtgatcttttcttcccatagccctgcctaag
cttccttcctcccattctttccatacgcccttacttccaaatggatagac
tctctcatacacacacacacacacacacacacacacacacacatctcctg
ctgagtttgttttgctactgtgtatatatggtttgaggactaagtatatt
gtattggacagccaattagggggtctcatcctggaagaggttgactctcc
ctctcagcagtcatcagttacctgtagtttcttgcccaatgatatggccc
catgagatttttctttttatgcatcagtatgtctcttgacatgccattaa
ttagatcttatttatccagccatttctagagagactgttttcacagagac
tttcttggaatctggctctataatgattcattcccttatcttgatgttct
ctggtataggtgcaggactgtgtgtaatgtatcattagcctggctctcta
taatctagctctgattgacttggagtgtgttcggtctagactttccattt
ac

gaattccaaagaatgctttgagcttatggattctggtcataatggtgtca
cactgcagggtttctgccacccagagtacatgtggctacgtcaggacacg
tgctctaaatccttgcctcttgccctttaccccaaggagactgaaagact
gtggtgtagtagtatgggcttccttagcctttctttccatcagtgagaag
ttacaagttctgtaatgctttcaaatgtaaggacagggcaagccccaaac
acaattcctttctctccctgtatttcctccatttcttgccctcactgact
cacttatctgacttgatagaaaacacacacacacatacacacacacacac
acacacacacacacacacacacacacacaaagcacatgatttttcatgtt
tttttatgtttatgtgagttttgactgaatgcatttatgtatatgtgtgt
atgcatgcatgtattaggcatgtatgtattatgtattacatattatgtat
tacatattatgtattacatattatgtattacatattatgtattatgtatg
tatattcaccatgttcatgcagtgcctgcaagaatcaaatctgctggcac
tggagttgtcagaccatgaaagcatttaggaatcaaatccaggtcctctg
gaaaagcagctggtattcttaacctctgagacatatctccaactccaagg
gtctacaattattattaaattagaaagaactagagttactcatggttctt
tttgctagtactgtgtttttaaagagaaaaaaaattgtgacttcaggttc
cattgcttttctaaaggatgaaaactatttttgcaggtttgttgagggtc
taggaggcagcaacatgaaagatgccctgtactctttccaaaagaaaatg
acaatcaacaaatgttcattccccagggctgaagccactatattatataa
tgtagagttcaatgtatttgttgtcatactacgtaacatatcaccaaatt
tcatgtattttctatgttatttttgtattgatgataatatgtgtgcatgg
tgcctgcacatgagtatatgaagtgcaatatgcccatgcagttgcatgca
gaagctagaagcaggaccacaggaacttatttggcctaaaataactcttc
taaccttaacttgctggaaacggtgtctctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9890792_9892013
seq2: B6Ng01-001M22.b_46_1247

seq1  GAATTCTTCCATTAGTGTTGGAGATCTAAATTGTTGCTTAACTATGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCATTAGTGTTGGAGATCTAAATTGTTGCTTAACTATGCCCC  50

seq1  CATCATCTTCAATTTATCTATTCAAAAATTTTAAAAAATATCAATTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTTCAATTTATCTATTCAAAAATTTTAAAAAATATCAATTCTAG  100

seq1  AAAGCCCTGTCTGATCATATCTGATCTGTCTGATCACGTAAATACATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGTCTGATCATATCTGATCTGTCTGATCACGTAAATACATGAA  150

seq1  AGTATTTACTTTCATAGTATTCATAAATTTTAAAGTTATCCTTAGCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACTTTCATAGTATTCATAAATTTTAAAGTTATCCTTAGCCCTT  200

seq1  TTATCTGTTTAATATGAACAAAAATAATATTTTCATGATGAATAGCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTTAATATGAACAAAAATAATATTTTCATGATGAATAGCCTTT  250

seq1  TCCTTTGGAATCCTTATTTGATTCCTTTTCTTTAACTTCAAGAAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGAATCCTTATTTGATTCCTTTTCTTTAACTTCAAGAAAAATAT  300

seq1  CGGTGAAGCTTGAAGGTCTTTGTAATAGTAGTAAGAGGCAAAGAATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAAGCTTGAAGGTCTTTGTAATAGTAGTAAGAGGCAAAGAATTCCA  350

seq1  GGAGACATGACAGTGGCCTTTTTTAGTGTAACAGCTGTGAGCCACCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATGACAGTGGCCTTTTTTAGTGTAACAGCTGTGAGCCACCAATA  400

seq1  CCTACTCCATTCTGCTGTTTGGCATCTAAGGGAAATTTTTCTATTGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCATTCTGCTGTTTGGCATCTAAGGGAAATTTTTCTATTGCCAT  450

seq1  TCTCTCTCCTACATGGTCTTACAGACAAGTGCAGGTGGTTTGGTCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCTACATGGTCTTACAGACAAGTGCAGGTGGTTTGGTCTGCAC  500

seq1  TCCTCAAGGGGAATTGGTAATGTCAACCTTTAGTCACATTTCTACTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGGGGAATTGGTAATGTCAACCTTTAGTCACATTTCTACTTTCT  550

seq1  AGAAAACATGATAGGAGAGAGAAAAAAATGAGAATTGAGCAATTGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATGATAGGAGAGAGAAAAAAATGAGAATTGAGCAATTGGGAGA  600

seq1  AGGCTCAAGTTGTCATCATTTTAATGCCTGTTGCGTTGTTAATTAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAGTTGTCATCATTTTAATGCCTGTTGCGTTGTTAATTAAAATA  650

seq1  AAATTGTATCACTTTACTTGTGATCTTTTCTTCCCATAGCCCTGCCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATCACTTTACTTGTGATCTTTTCTTCCCATAGCCCTGCCTAAG  700

seq1  CTTCCTTCCTCCCATTCTTTCCATACGCCCTTACTTCCAAATGGATAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTCCCATTCTTTCCATACGCCCTTACTTCCAAATGGATAGAC  750

seq1  TCTCTCATACACACACACACACACACACACACACACACACACATCTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATACACACACACACACACACACACACACACACACACATCTCCTG  800

seq1  CTGAGTTTGTTTTGCTACTGTGTATATATGGTTTGAGGACTAAGTATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGTTTTGCTACTGTGTATATATGGTTTGAGGACTAAGTATATT  850

seq1  GTATTGGACAGCCAATTAGGGGGTCTCATCCTGGAAGAGGTTGACTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGACAGCCAATTAGGGGGTCTCATCCTGGAAGAGGTTGACTCTCC  900

seq1  CTCTCAGCAGTCATCAGTTACCTGTAGTTTCTTGCCCAATGATATGGCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCAGTCATCAGTTACCTGTAGTTTCTTGCCCAATGATATGGCCC  950

seq1  CATGAGATTTTTCTTTTTATGCATCAGTATGTCTCTTGACATTGCCATTA  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGAGATTTTTCTTTTTATGCATCAGTATGTCTCTTGACA-TGCCATTA  999

seq1  ATTAGATCTTATTTATCCAGCCATTTCTAGGAGAGACTG-TTTCACAGAA  1049
      ||||||||||||||||||||||||||||| ||||||||| |||||||| |
seq2  ATTAGATCTTATTTATCCAGCCATTTCTA-GAGAGACTGTTTTCACAG-A  1047

seq1  GACTTCCTGGGAATCTGGCTCTTATAATTGATTCCATCCCCTATCCTGAA  1099
      ||||| || |||||||||||| ||||| ||||||  |||| |||| || |
seq2  GACTTTCTTGGAATCTGGCTC-TATAA-TGATTCATTCCCTTATCTTG-A  1094

seq1  TGTTCTCTGAGCCATAGGTGCAGGAGCTGTGTTGTAAATGTATCCATTAT  1149
      ||||||||  |  |||||||||||| ||||| ||| ||||||| ||||| 
seq2  TGTTCTCT--GGTATAGGTGCAGGA-CTGTG-TGT-AATGTAT-CATTA-  1137

seq1  GGCTGGGCTCCTAATAATCCTTTGGTCTCTGAATTGGGTCTGGTTGTGGT  1199
       ||  |||||   ||||||   | | |||||| |   | || |  || ||
seq2  -GCCTGGCTCTCTATAATC---TAG-CTCTGATT---GACTTGGAGT-GT  1178

seq1  TTTCTGTTCTAG--TTTCCATTTAC  1222
       ||| | |||||  |||||||||||
seq2  GTTC-GGTCTAGACTTTCCATTTAC  1202


seq1: chr12_9984437_9985598
seq2: B6Ng01-001M22.g_67_1249 (reverse)

seq1  CAAAGAGACACTGTTTCAAGGCAG-TAAGG-TAG-AGAGTGA-TCTAGGC  46
      ||||||||||| ||||| ||  || ||||| ||| ||||| | | |||||
seq2  CAAAGAGACACCGTTTCCAGCAAGTTAAGGTTAGAAGAGTTATTTTAGGC  50

seq1  CAA--TAGT--CTGT-GTCCTGC-TCTAGCCTCTGCATGCAACTGCATGG  90
      |||   |||  |||| ||||||| |||||| |||||||||||||||||||
seq2  CAAATAAGTTCCTGTGGTCCTGCTTCTAGCTTCTGCATGCAACTGCATGG  100

seq1  GCATA-TGCAC-TCATATACTCATGTGCAGGCACCATGCACACATA-TAT  137
      ||||| ||||| |||||||||||||||||||||||||||||||||| |||
seq2  GCATATTGCACTTCATATACTCATGTGCAGGCACCATGCACACATATTAT  150

seq1  CATCAATACAAAAATAACATAGAAAATACATGAAATTTGGTGATATGTTA  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATACAAAAATAACATAGAAAATACATGAAATTTGGTGATATGTTA  200

seq1  CGTAGTATGACAACAAATACATTGAACTCTACATTATATAATATAGTGGC  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTATGACAACAAATACATTGAACTCTACATTATATAATATAGTGGC  250

seq1  TTCAGCCCTGGGGAATGAACATTTGTTGATTGTCATTT--CTTTGGAAAG  285
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTCAGCCCTGGGGAATGAACATTTGTTGATTGTCATTTTCTTTTGGAAAG  300

seq1  AGTACAGGGCATCTTTCATGTTGCTGCCT-CTAGA-CCTCAACAAACCTG  333
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  AGTACAGGGCATCTTTCATGTTGCTGCCTCCTAGACCCTCAACAAACCTG  350

seq1  CAAGAATAGTTTTCATCC-TTAGAAAAGCAATGGAACCTGAAGTCACAA-  381
      ||| |||||||||||||| |||||||||||||||||||||||||||||| 
seq2  CAAAAATAGTTTTCATCCTTTAGAAAAGCAATGGAACCTGAAGTCACAAT  400

seq1  TTTTTTTCTCTTTAAAAACACAGTACTAGCAAAAAGAACCATGAGTAACT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTTTAAAAACACAGTACTAGCAAAAAGAACCATGAGTAACT  450

seq1  CTAGTTCTTTCTAATTTAATAATAATTGTAGACCCTTGGAGTTGGAGATA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTTCTAATTTAATAATAATTGTAGACCCTTGGAGTTGGAGATA  500

seq1  TGTCTCAGAGGTTAAGAATACCAGCTGCTTTTCCAGAGGACCTGGATTTG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGAGGTTAAGAATACCAGCTGCTTTTCCAGAGGACCTGGATTTG  550

seq1  ATTCCTAAATGCTTTCATGGTCTGACAACTCCAGTGCCAGCAGATTTGAT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAATGCTTTCATGGTCTGACAACTCCAGTGCCAGCAGATTTGAT  600

seq1  TCTTGCAGGCACTGCATGAACATGGTGAATATACATACATAATACATAAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGGCACTGCATGAACATGGTGAATATACATACATAATACATAAT  650

seq1  ATGTAATACATAATATGTAATACATAATATGTAATACATAATATGTAATA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATACATAATATGTAATACATAATATGTAATACATAATATGTAATA  700

seq1  CATAATACATACATGCCTAATACATGCATGCATACACACATATACATAAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACATACATGCCTAATACATGCATGCATACACACATATACATAAA  750

seq1  TGCATTCAGTCAAAACTCACATAAACATAAAAAAACATGAAAAATCATGT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCAGTCAAAACTCACATAAACATAAAAAAACATGAAAAATCATGT  800

seq1  GCTT--TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  829
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  850

seq1  TGTGTGTGTGTTTTCTATCAAGTCAGATAAGTGAGTCAGTGAGGGCAAGA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTTCTATCAAGTCAGATAAGTGAGTCAGTGAGGGCAAGA  900

seq1  AATGGAGGAAATACAGGGAGAGAAAGGAATTGTGTTTGGGGCTTGCCCTG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAAATACAGGGAGAGAAAGGAATTGTGTTTGGGGCTTGCCCTG  950

seq1  TCCTTACATTTGAAAGCATTACAGAACTTGTAACTTCTCACTGATGGAAA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACATTTGAAAGCATTACAGAACTTGTAACTTCTCACTGATGGAAA  1000

seq1  GAAAGGCTAAGGAAGCCCATACTACTACACCACAGTCTTTCAGTCTCCTT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTAAGGAAGCCCATACTACTACACCACAGTCTTTCAGTCTCCTT  1050

seq1  GGGGTAAAGGGCAAGAGGCAAGGATTTAGAGCACGTGTCCTGACGTAGCC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAAGGGCAAGAGGCAAGGATTTAGAGCACGTGTCCTGACGTAGCC  1100

seq1  ACATGTACTCTGGGTGGCAGAAACCCTGCAGTGTGACACCATTATGACCA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACTCTGGGTGGCAGAAACCCTGCAGTGTGACACCATTATGACCA  1150

seq1  GAATCCATAAGCTCAAAGCATTCTTTGGAATTC  1162
      |||||||||||||||||||||||||||||||||
seq2  GAATCCATAAGCTCAAAGCATTCTTTGGAATTC  1183


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