BAC Information

Click to search

BAC

Clone NameB6Ng01-002K18
Chromosome12 (Build37)
Map Location 10,245,122 - 10,341,055
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K18.bB6Ng01-002K18.g
ACCDH840626DH840627
length1,138726
definitionDH840626|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K18, 5' end.DH840627|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,339,897 - 10,341,055)(10,245,122 - 10,245,830)
sequence
gaattctccaagatactatgaacagaaagaaggctcatacattgtaacag
gatcaatgctgttgagagaaaccaaggtcaaatagtaggataaaatagtg
actgacaaggtcaagaggcaaagtaaagatagcacctggaaatcaggagt
tagtttagtagatagaagacagcctgaaatcagaaatggaagggattaga
gtgtagattgggacaaggggtggggacaaaggagtaggtaatggagcagt
atagcaggctagctcctctgttttacattgtatctggttttcttaaagac
agagaggaaatcatgaacttattgacctaggaattccctaagagagagag
aaagctttaggcttcaagtctatcttctttatgggttcaaagaataatat
tttctgatatttgtaatattcagtctacagtgagtgacaaatagataatt
cattaatactggtgttttattaagagactaaaccatcttctcctgaatct
aatgctatgtgaagattgatggaactttcaagataatccaagagattata
taaacatttctatcatctaagactcaggggaaacattgagaatagcagta
gaaagattttaagagtcagaggacaagggtgcctgctttaagatattgtc
ttctagaaatgacagggaagtggtactcatgaagtcacaagaaattggtt
ccctgagcgatgaccacaccattccctatgtcagtgtggactgggagaag
tccaccagactctactcttaaatgaataactacaggtcgtaaatggcttc
tgagagaggtaggatcattttttcctaggcacaaattccgtgataggcta
tcacatatgtttatctgcatatgcatatgcatatgcgtgtgcgtgtgtgt
gtgcccgtggtgcgttgtgtgttgtgtgtgtgtgtgtgtcactaacccca
gaagagctgggagagtgacagtgacatgattggacgtggggagataggag
aaactaggtaagcatatgtattatgcatggtttgttaagaaaatagagta
ttgaagaaattcatactcatattggagcacttcgcctttgttgtctttct
cgactgcttaatgaagtgggtcgacttaattgctcgtt
gaattctttcccagaatatggatctcaccgatttagttagattagttgac
catgaacccctgaatgtatctttcccttcccacaggactggtgttagaga
tatacactatgattagcatttacatacgtgctggggacataaatgtaggg
ctcagtgcttgtgtgccacactgaacagacaacattccaagttcatttaa
acaagtaatgtttttaatgtatttatttttatcttatatgtataagtgtt
ttgccagcatacacacacacacacatacacacatatatatgtatggatat
atatatatatatatatatatatatatatatatatatatatatatctaaat
cttgtttggtacccatgtaggacaaaaggacatcaaaacccctggaacta
gagtaataagctattataagtgattgcagaagcggggtgtggtggcatac
gcctttcacacagagctcgggagtcagaggcagggagatttctaggttca
gggacagcctgtgtgacagagtgagctcctgtacacccatggctatacat
ataaacccaggcaggaataaacaaatataacaaaaagaaccatatatata
gattgacagagacaaaaattgggacatctacaatagcagaaagagatata
taccatcagacgcatttctcatgcacccgaatccgcatttaaattttttc
aatatatataaaattattttacatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10339897_10341055
seq2: B6Ng01-002K18.b_44_1181 (reverse)

seq1  AACGAGCAAATTTAAGTCTGGCACCAACTTCATATAAGGCAGTCGGGAAA  50
      |||||||||  |||||||    ||| ||||||| ||| ||||||| ||||
seq2  AACGAGCAA--TTAAGTC---GACCCACTTCAT-TAA-GCAGTCGAGAAA  43

seq1  GGACAACATA-GCGAGTGGCTTCCCAATATTGAGTATGAATTTCTTCAAT  99
       ||||||| | ||||   |||  |||||| ||||||||||||||||||||
seq2  -GACAACAAAGGCGAAGTGCT--CCAATA-TGAGTATGAATTTCTTCAAT  89

seq1  ACTCTATTTTTCCTTTAACAAACCATGCATAATTACACTATGCTTACCTA  149
      ||||||||||    |||||||||||||||||| |||| ||||||||||||
seq2  ACTCTATTTT---CTTAACAAACCATGCATAA-TACA-TATGCTTACCTA  134

seq1  GTTTTCTCCCTTATCTTCCCCACGTCCAATTCATGTCACTGTCACTCCTC  199
      | |||||||  |||| ||||||||||||| |||||||||||||||| |||
seq2  G-TTTCTCC--TATC-TCCCCACGTCCAA-TCATGTCACTGTCACT-CTC  178

seq1  CCAGCTCCTTCTGGGGTTAGTGACACACACACACACACACACGCAC-ACG  248
      |||||| |||||||||||||||||||||||||||||||| || ||| |||
seq2  CCAGCT-CTTCTGGGGTTAGTGACACACACACACACACA-ACACACAACG  226

seq1  CA-CACGTGCACACACACACGCACACGCATATGCATATGCATATGCAGAT  297
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGGGCACACACACACGCACACGCATATGCATATGCATATGCAGAT  276

seq1  AAACATATGTGATAGCCTATCACGGAATTTGTGCCTAGGAAAAAATGATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATGTGATAGCCTATCACGGAATTTGTGCCTAGGAAAAAATGATC  326

seq1  CTACCTCTCTCAGAAGCCATTTACGACCTGTAGTTATTCATTTAAGAGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTCTCAGAAGCCATTTACGACCTGTAGTTATTCATTTAAGAGTA  376

seq1  GAGTCTGGTGGACTTCTCCCAGTCCACACTGACATAGGGAATGGTGTGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGTGGACTTCTCCCAGTCCACACTGACATAGGGAATGGTGTGGT  426

seq1  CATCGCTCAGGGAACCAATTTCTTGTGACTTCATGAGTACCACTTCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTCAGGGAACCAATTTCTTGTGACTTCATGAGTACCACTTCCCTG  476

seq1  TCATTTCTAGAAGACAATATCTTAAAGCAGGCACCCTTGTCCTCTGACTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAGAAGACAATATCTTAAAGCAGGCACCCTTGTCCTCTGACTC  526

seq1  TTAAAATCTTTCTACTGCTATTCTCAATGTTTCCCCTGAGTCTTAGATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTTTCTACTGCTATTCTCAATGTTTCCCCTGAGTCTTAGATGA  576

seq1  TAGAAATGTTTATATAATCTCTTGGATTATCTTGAAAGTTCCATCAATCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTTTATATAATCTCTTGGATTATCTTGAAAGTTCCATCAATCT  626

seq1  TCACATAGCATTAGATTCAGGAGAAGATGGTTTAGTCTCTTAATAAAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGCATTAGATTCAGGAGAAGATGGTTTAGTCTCTTAATAAAACA  676

seq1  CCAGTATTAATGAATTATCTATTTGTCACTCACTGTAGACTGAATATTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTAATGAATTATCTATTTGTCACTCACTGTAGACTGAATATTAC  726

seq1  AAATATCAGAAAATATTATTCTTTGAACCCATAAAGAAGATAGACTTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGAAAATATTATTCTTTGAACCCATAAAGAAGATAGACTTGAA  776

seq1  GCCTAAAGCTTTCTCTCTCTCTTAGGGAATTCCTAGGTCAATAAGTTCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGCTTTCTCTCTCTCTTAGGGAATTCCTAGGTCAATAAGTTCAT  826

seq1  GATTTCCTCTCTGTCTTTAAGAAAACCAGATACAATGTAAAACAGAGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTCTCTGTCTTTAAGAAAACCAGATACAATGTAAAACAGAGGAG  876

seq1  CTAGCCTGCTATACTGCTCCATTACCTACTCCTTTGTCCCCACCCCTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGCTATACTGCTCCATTACCTACTCCTTTGTCCCCACCCCTTGT  926

seq1  CCCAATCTACACTCTAATCCCTTCCATTTCTGATTTCAGGCTGTCTTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTACACTCTAATCCCTTCCATTTCTGATTTCAGGCTGTCTTCTA  976

seq1  TCTACTAAACTAACTCCTGATTTCCAGGTGCTATCTTTACTTTGCCTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAACTAACTCCTGATTTCCAGGTGCTATCTTTACTTTGCCTCTT  1026

seq1  GACCTTGTCAGTCACTATTTTATCCTACTATTTGACCTTGGTTTCTCTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTCAGTCACTATTTTATCCTACTATTTGACCTTGGTTTCTCTCA  1076

seq1  ACAGCATTGATCCTGTTACAATGTATGAGCCTTCTTTCTGTTCATAGTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTGATCCTGTTACAATGTATGAGCCTTCTTTCTGTTCATAGTAT  1126

seq1  CTTGGAGAATTC  1159
      ||||||||||||
seq2  CTTGGAGAATTC  1138

seq1: chr12_10245122_10245830
seq2: B6Ng01-002K18.g_69_773

seq1  GAATTCTTTCCCAGAATATGGATCTCACCGATTTAGTTAGATTAGTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCAGAATATGGATCTCACCGATTTAGTTAGATTAGTTGAC  50

seq1  CATGAACCCCTGAATGTATCTTTCCCTTCCCACAGGACTGGTGTTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCCCTGAATGTATCTTTCCCTTCCCACAGGACTGGTGTTAGAGA  100

seq1  TATACACTATGATTAGCATTTACATACGTGCTGGGGACATAAATGTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTATGATTAGCATTTACATACGTGCTGGGGACATAAATGTAGGG  150

seq1  CTCAGTGCTTGTGTGCCACACTGAACAGACAACATTCCAAGTTCATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTTGTGTGCCACACTGAACAGACAACATTCCAAGTTCATTTAA  200

seq1  ACAAGTAATGTTTTTAATGTATTTATTTTTATCTTATATGTATAAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAATGTTTTTAATGTATTTATTTTTATCTTATATGTATAAGTGTT  250

seq1  TTGCCAGCATACACACACACACACATACACACATATATATGTATGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCATACACACACACACACATACACACATATATATGTATGGATAT  300

seq1  ATATATATATATATATATATATATATATATATATATATATATATCATAAG  350
      |||||||||||||||||||||||||||||||||||||||||||||  || 
seq2  ATATATATATATATATATATATATATATATATATATATATATATCTAAAT  350

seq1  CATGTTTGGTACCCATGTAGGACAAAAGGACATCAGAACCCCTGGAACTA  400
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTGTTTGGTACCCATGTAGGACAAAAGGACATCAAAACCCCTGGAACTA  400

seq1  GAGTAATAAGCTATTATAAGTGATTGCAGAAGCGGGGTGTGGTGGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTAATAAGCTATTATAAGTGATTGCAGAAGCGGGGTGTGGTGGCATAC  450

seq1  GCCTTTAGTCCCAGCACTCAGGAGTCAGAGGCAGGCAGATTTCTGAGTTC  500
      ||||||   | |||  ||| ||||||||||||||| ||||||||  ||||
seq2  GCCTTT-CACACAGAGCTCGGGAGTCAGAGGCAGGGAGATTTCTAGGTTC  499

seq1  AAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACACCCAGGGCTATACA  550
      | || |||||||    ||| |||||||||| | ||||||| |||||||||
seq2  AGGGACAGCCTGTGTGACAGAGTGAGCTCCTGTACACCCATGGCTATACA  549

seq1  GAGAAACCCTGTCTGGAAAAAACAAAACAAAACAAAACAAAACCAAAAAA  600
       | |||||| | | |||| |||| ||| | ||||||| | ||||| | | 
seq2  TATAAACCCAGGCAGGAATAAAC-AAATATAACAAAA-AGAACCATATAT  597

seq1  AGTGATTGCTGGAAACCAAACATGGGCCCTCTACAATAGCAGTAAGTGCT  650
      |  |||||   || || |||  |||| | ||||||||||||| ||| | |
seq2  ATAGATTGACAGAGACAAAAATTGGGACATCTACAATAGCAGAAAGAGAT  647

seq1  CTTTAACCATCA-AGCCATTTCTCTTGCTCCAGAATCAGCATTTAAATTT  699
       | | ||||||| |  |||||||| ||| || ||||| ||||||||| ||
seq2  ATAT-ACCATCAGACGCATTTCTCATGCACCCGAATCCGCATTTAAA-TT  695

seq1  TTTTCAATAT  709
      ||||||||||
seq2  TTTTCAATAT  705