BAC Information

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BAC

Clone NameB6Ng01-002L20
Chromosome12 (Build37)
Map Location 61,283,938 - 61,343,159
singlet/doubletdoublet
Overlap genenone
Upstream geneMgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002L20.bB6Ng01-002L20.g
ACCDH840670DH840671
length1,1761,097
definitionDH840670|Mus musculus domesticus DNA, BAC clone: B6Ng01-002L20, 5' end.DH840671|Mus musculus domesticus DNA, BAC clone: B6Ng01-002L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,283,938 - 61,285,124)(61,342,053 - 61,343,159)
sequence
gaattcaagaagagattataatttatcattataaaagctttgatgatgtg
attataaggtctcttgggagatattaaaataagccaaacaaaattgttaa
caaatcaatcacagcagagacttactgtccaatattgtaacatgtttaat
tcaaacatacaaaataaacatttaattattggcacttgaaatgtcaagtt
aaataacaagtagaatatttaaattatgggtgtacgtgcagaaagtaata
agatagagtccaaggcaaaaatgtttattacattcttgaattaacctttc
ttttgtagtatagactatatctgtcttccgtcatccaggaaggttaaaat
aataaatattggttgttaaaatatttctataagcatatggtacacctgat
tatataactgctgcaaaatgtagaatagatagttcctaattctatcaatt
cgattggtgggacatctttcaagtcaggctaaaatatgatataagacata
tgagttactgtgctcagaaaagtacacttatttcttcaagcctcaattta
tgccagttatatggaaattgccaaagttaatcttttgctgtaactttaat
tttataatgtgtttttaagagatactacatcagagtttattatagattaa
tttgggaaatgaaatgccctcttttttatttttattaccatccttgaata
gtaagccatgccttactactaggtatgtttacagttatgtttatagaggt
gtttattttcaaaacttcaaaaaaaagtcacaacaactgatattttcttt
cttagataatgtgttttatcattcttcaagagtgaaatagatgttcaagt
tgtataaaagtccacaagatccagttaaagtcctcattaagataagggtt
tcttttgcacttcctcagtatatggctgtctacataactctctgtccttt
gaagtcatgtctctgaatgaattaataaataaatagtaggcaccgatgta
tcgtattttgagaaagtgattgtcctggaagctcttgttttgaatattat
acatctacactataaatgtggtggtggagaaacattggctctcctctttt
gaaggtatttaggtgctcaaagattcatttcatcttctggaagtagattg
ttacaacatagttatgaagaaagtgc
gaattcatttccattcatttagtccttccttggtttcttctcctttttaa
aattttaatttatgtttttgtttattcactttatatcccacttattgccc
tactccaggtcacccttcccacaatcattcccctacctccccaccctttc
ttctctgagcaggcggggatcactctgcatattcctctagtcatggcact
tcaagtctctgtgaacttagctactttctttcctattgaagagagacaag
gcaacccagctagaagaacatatcgtatgtataggcaacagagacccaca
tgaagacaaagatgcgcatccgctacatatgagcagaaggcctagattca
gcctatgtgtgttctttggttggtggttcagactctgagaatcccaaggg
tccaaagttagttgactcttttggtcttcctgtggggtttctattccctt
ctggtcccatggtcctttctcctattctttcataagagtccctacactcc
attccctgtttggtgtgggtttctatgtctgtctgctgactcacactcta
aacaatttgtttgtgataaatctataagtctgtggtatagttcagccttg
ccaaaaatgcacaaagcccagggtttgatacccaggaacacattaatcag
gtgtggtagcacatgcctgaaatgccagaactttggatgtagaatcagga
aaatctaaagttcaagatcactcttgcctacatagtaagttgaaaaagag
aacccgaggtacaggagaatgtataaaaagaataaaactgcatggataaa
caaaaaaaacttctcttttccttgtatacatttttgttgaaatggctgaa
ctatataaaatatacacaaaccttgggaatatatacagaaatatactact
atttgcaaaagagagtatgacaacaagtttcaaactttagtgaataattg
aacaaaagatataataacaaagttagttacatctggataaattctagcag
caaggtgtttctaggtcagataactgtttaagagtgtgtgggcatcatca
gagaagaagaagagaagaaggaggaggagagaaaaaaggaggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61283938_61285124
seq2: B6Ng01-002L20.b_48_1223

seq1  GAATTCAAGAAGAGATTATAATTTATCATTATAAAAGCTTTGATGATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGAGATTATAATTTATCATTATAAAAGCTTTGATGATGTG  50

seq1  ATTATAAGGTCTCTTGGGAGATATTAAAATAAGCCAAACAAAATTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGGTCTCTTGGGAGATATTAAAATAAGCCAAACAAAATTGTTAA  100

seq1  CAAATCAATCACAGCAGAGACTTACTGTCCAATATTGTAACATGTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAATCACAGCAGAGACTTACTGTCCAATATTGTAACATGTTTAAT  150

seq1  TCAAACATACAAAATAAACATTTAATTATTGGCACTTGAAATGTCAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATACAAAATAAACATTTAATTATTGGCACTTGAAATGTCAAGTT  200

seq1  AAATAACAAGTAGAATATTTAAATTATGGGTGTAAGTGCAGAAAGTAATA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAATAACAAGTAGAATATTTAAATTATGGGTGTACGTGCAGAAAGTAATA  250

seq1  AGATAGAGTCCAAGGCAAAAATGTTTATTACATTCTTGAATTAACCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGTCCAAGGCAAAAATGTTTATTACATTCTTGAATTAACCTTTC  300

seq1  TTTTGTAGTATAGACTATATCTGTCTTCCGTCATCCAGGAAGGTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTATAGACTATATCTGTCTTCCGTCATCCAGGAAGGTTAAAAT  350

seq1  AATAAATATTGGTTGTTAAAATATTTCTATAAGCATATGGTACACCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTGGTTGTTAAAATATTTCTATAAGCATATGGTACACCTGAT  400

seq1  TATATAACTGCTGCAAAATGTAGAATAGATAGTTCCTAATTCTATCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTGCTGCAAAATGTAGAATAGATAGTTCCTAATTCTATCAATT  450

seq1  CGATTGGTGGGACATCTTTCAAGTCAGGCTAAAATATGATATAAGACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGGTGGGACATCTTTCAAGTCAGGCTAAAATATGATATAAGACATA  500

seq1  TGAGTTACTGTGCTCAGAAAAGTACACTTATTTCTTCAAGCCTCAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACTGTGCTCAGAAAAGTACACTTATTTCTTCAAGCCTCAATTTA  550

seq1  TGCCAGTTATATGGAAATTGCCAAAGTTAATCTTTTGCTGTAACTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTATATGGAAATTGCCAAAGTTAATCTTTTGCTGTAACTTTAAT  600

seq1  TTTATAATGTGTTTTTAAGAGATACTACATCAGAGTTTATTATAGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGTGTTTTTAAGAGATACTACATCAGAGTTTATTATAGATTAA  650

seq1  TTTGGGAAATGAAATGCCCTCTTTTTTATTTTTATTACCATCCTTGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAATGAAATGCCCTCTTTTTTATTTTTATTACCATCCTTGAATA  700

seq1  GTAAGCCATGCCTTACTACTAGGTATGTTTACAGTTATGTTTATAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCATGCCTTACTACTAGGTATGTTTACAGTTATGTTTATAGAGGT  750

seq1  GTTTATTTTCAAAACTTCAAAAAAAAGTCACAACAACTGATATTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTCAAAACTTCAAAAAAAAGTCACAACAACTGATATTTTCTTT  800

seq1  CTTAGATAATGTGTTTTATCATTCTTCAAGAGTGAAATAGATGTTCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAATGTGTTTTATCATTCTTCAAGAGTGAAATAGATGTTCAAGT  850

seq1  TGTATAAAAGTCCACAAGATCCAGTTAAAGTCCTCATTAAGATAA-GGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTATAAAAGTCCACAAGATCCAGTTAAAGTCCTCATTAAGATAAGGGTT  900

seq1  TCTTTTGCAC-TCCTCAGTAATATGGCTGTCTACATAACTCTCTGTCCTT  948
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TCTTTTGCACTTCCTCAGT-ATATGGCTGTCTACATAACTCTCTGTCCTT  949

seq1  TGAAGTCATGTCTCTGAATGAATTAATAAATAAATAGTAGGCACCGATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAGTCATGTCTCTGAATGAATTAATAAATAAATAGTAGGCACCGATG-  998

seq1  TATCGTAATTTTGAGAAAAGTGAATTGTCCTGGAAGCTCTTGTTTTGAAT  1048
      |||||| |||||||| |||||| |||||||||||||||||||||||||||
seq2  TATCGT-ATTTTGAG-AAAGTG-ATTGTCCTGGAAGCTCTTGTTTTGAAT  1045

seq1  AATTATTACATCTACAACTATTAAATGTTGTTGGTTGGAGAAACATTGGC  1098
       |||| ||||||||| |||| ||||||| ||  | |||||||||||||||
seq2  -ATTA-TACATCTAC-ACTA-TAAATGTGGT--GGTGGAGAAACATTGGC  1089

seq1  TCTCCTC-TTTGAAGGTATTTAAGTGCTCAAAAGATACATTTCATTCTTC  1147
      ||||||| |||||||||||||| |||||| |||||| ||||||| |||||
seq2  TCTCCTCTTTTGAAGGTATTTAGGTGCTC-AAAGATTCATTTCA-TCTTC  1137

seq1  TGAAAGTAAGATTG-TACAACATAGTTAATGAAGAAAGTGC  1187
      || |||| |||||| |||||||||||| |||||||||||||
seq2  TGGAAGT-AGATTGTTACAACATAGTT-ATGAAGAAAGTGC  1176

seq1: chr12_61342053_61343159
seq2: B6Ng01-002L20.g_69_1164 (reverse)

seq1  TCCTCCTCCTCTTCCTCTTC-CTCCTCCTCTTTCTTCTTCTTCTTTCCTC  49
      |||||||||| ||    ||| ||||||||| |||||| ||||| ||| ||
seq2  TCCTCCTCCTTTT----TTCTCTCCTCCTCCTTCTTC-TCTTC-TTCTTC  44

seq1  -CTGATGATGCCCACACACTCTTAAACAGTTAATTCTGGCCTAGAAACAC  98
       |||||||||||||||||||||||||||||||  |||| |||||||||||
seq2  TCTGATGATGCCCACACACTCTTAAACAGTTA--TCTGACCTAGAAACAC  92

seq1  CTTGCTGCTAAGAATTTATCCAAGATTGTAACTAACTTTGTTATTATATT  148
      ||||||||| ||||||||||| ||| |||||||||||||||||||||| |
seq2  CTTGCTGCT-AGAATTTATCC-AGA-TGTAACTAACTTTGTTATTATA-T  138

seq1  CTTTTGTTCAATTATTCACTAAAGTTTG-AACTTGTTGTCATACTTCTCT  197
      |||||||||||||||||||||||||||| ||||||||||||||| |||| 
seq2  CTTTTGTTCAATTATTCACTAAAGTTTGAAACTTGTTGTCATAC-TCTC-  186

seq1  TTTTGCAAATAGTAGTATATTTCTGTATATATT-CCAAGGTTTGTGTATA  246
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTGCAAATAGTAGTATATTTCTGTATATATTCCCAAGGTTTGTGTATA  236

seq1  TTTTTATATAGTTCAGCCATTTCAACAAAAATGTATACAAGGAAAAGAGA  296
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTATATAGTTCAGCCATTTCAACAAAAATGTATACAAGGAAAAGAGA  285

seq1  AGTTTTTTTTGTTTATCCATGCAGTTTTATTCTTTTTATACATTCTCCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTTTGTTTATCCATGCAGTTTTATTCTTTTTATACATTCTCCTG  335

seq1  TACCTCGGGTTCTCTTTTTCAACTTACTATGTAGGCAAGAGTGATCTTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGGGTTCTCTTTTTCAACTTACTATGTAGGCAAGAGTGATCTTGA  385

seq1  ACTTTAGATTTTCCTGATTCTACATCCAAAGTTCTGGCATTTCAGGCATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATTTTCCTGATTCTACATCCAAAGTTCTGGCATTTCAGGCATG  435

seq1  TGCTACCACACCTGATTAATGTGTTCCTGGGTATCAAACCCTGGGCTTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCACACCTGATTAATGTGTTCCTGGGTATCAAACCCTGGGCTTTG  485

seq1  TGCATTTTTGGCAAGGCTGAACTATACCACAGACTTATAGATTTATCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTTGGCAAGGCTGAACTATACCACAGACTTATAGATTTATCACA  535

seq1  AACAAATTGTTTAGAGTGTGAGTCAGCAGACAGACATAGAAACCCACACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTGTTTAGAGTGTGAGTCAGCAGACAGACATAGAAACCCACACC  585

seq1  AAACAGGGAATGGAGTGTAGGGACTCTTATGAAAGAATAGGAGAAAGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGAATGGAGTGTAGGGACTCTTATGAAAGAATAGGAGAAAGGAC  635

seq1  CATGGGACCAGAAGGGAATAGAAACCCCACAGGAAGACCAAAAGAGTCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACCAGAAGGGAATAGAAACCCCACAGGAAGACCAAAAGAGTCAA  685

seq1  CTAACTTTGGACCCTTGGGATTCTCAGAGTCTGAACCACCAACCAAAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTGGACCCTTGGGATTCTCAGAGTCTGAACCACCAACCAAAGAA  735

seq1  CACACATAGGCTGAATCTAGGCCTTCTGCTCATATGTAGCGGATGCGCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGGCTGAATCTAGGCCTTCTGCTCATATGTAGCGGATGCGCAT  785

seq1  CTTTGTCTTCATGTGGGTCTCTGTTGCCTATACATACGATATGTTCTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTCATGTGGGTCTCTGTTGCCTATACATACGATATGTTCTTCT  835

seq1  AGCTGGGTTGCCTTGTCTCTCTTCAATAGGAAAGAAAGTAGCTAAGTTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTTGCCTTGTCTCTCTTCAATAGGAAAGAAAGTAGCTAAGTTCA  885

seq1  CAGAGACTTGAAGTGCCATGACTAGAGGAATATGCAGAGTGATCCCCGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTGAAGTGCCATGACTAGAGGAATATGCAGAGTGATCCCCGCC  935

seq1  TGCTCAGAGAAGAAAGGGTGGGGAGGTAGGGGAATGATTGTGGGAAGGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAGAAGAAAGGGTGGGGAGGTAGGGGAATGATTGTGGGAAGGGT  985

seq1  GACCTGGAGTAGGGCAATAAGTGGGATATAAAGTGAATAAACAAAAACAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGTAGGGCAATAAGTGGGATATAAAGTGAATAAACAAAAACAT  1035

seq1  AAATTAAAATTTTAAAAAGGAGAAGAAACCAAGGAAGGACTAAATGAATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATTTTAAAAAGGAGAAGAAACCAAGGAAGGACTAAATGAATG  1085

seq1  GAAATGAATTC  1107
      |||||||||||
seq2  GAAATGAATTC  1096