BAC Information

Click to search

BAC

Clone NameB6Ng01-002O18
Chromosome12 (Build37)19 (Build37)
Map Location 73,789,629 - 73,789,7817,769,502 - 7,770,642
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7
Downstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O18.bB6Ng01-002O18.g
ACCDH840799DH840800
length5831,125
definitionDH840799|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O18, 5' end.DH840800|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,789,629 - 73,789,781)(7,769,502 - 7,770,642)
sequence
gaattcacaacagaggaatctagaatggccaagaagcacttaaagaaatg
ttcaaagtcctcagtgatcagggaaatgcaaattaaagcaacccagagat
tccactttacaccaatcagaatggctaaaatcaaaaactcaggtgacagc
acatgttggtgagaatgtgaagagggaaactactccattgctgctgggat
tgcaaactggtacaaccatggtggaaatcaatctggaggttcctcagtac
attggaaatagatctaccagaagacccagctataccactcttgggcatat
acccaaaagatatcccagcatgacccaggggaatatgctccacaatgttc
atagtggccatatttgtgatagccagaagctggaaacaacccagatatcc
caaaacagaagaatggatacagaaggctgggcatagtggtgcacgccttt
aatcccagcactcgggaggcagaggcaggtggatttctgagttcgaggcc
agcctggtctacaaagtgagttccaggacagccagggctatacagagaaa
ccctgtctcgaaaaaacaaaacaaaacaaaaca
gaattctacaggcagagctggtaacaaaaggaagagtgccatatccagga
gtggtaaagcgtgaggtgctggaacaagtagagtcagggtacagaatgcc
ttgccctcagggctgtccagaatccctccatgaattgatgagtctttgct
ggaagatggatcctgatgaaaggccaacgtttgaatgtattcagtccttg
gaagactacgtcactgctgcagagccacagtaccaaccaggagaaaaatt
gtaatccaagtaacctgtgtgcacaaaaccacggagaccttgtgtgagct
cctcctgcacaggaaagaggaggtgctcttcactctgcgtgtttcttatg
gaaactggaatttcagatatggctacacaaaaccacttttttttcctctc
caagtgttaagctctaaagtaccaatgatgcatcttacaacttacttcag
ggtccagagaaagtagagatagatagtgtgactgtgggtgtagcatagta
agaaagagcaacaggactactggttactagtcattgacttttcttcccca
aattcagaattgccacgagaaagctatttatagttatgtacaaaacttgg
ctgttacaccacagtaaagtcgaaagtcaaaggaaaaaaaaaagaatctg
aaacccaaatttctacattataagaatcttctacattataacaatcaaat
acaattttataagaataattaaatcatagatatgtcaaggaaaaaaaaag
aagtatggcctattcggttgaagaccaactttgagatcagagtaaactga
ggtggaacatccaccactattcaaaatgaaacatactcagaacggtctct
gtgggagatttcctaggcaaatactctaaaagatatatctaaaatatatg
taaagaatgaaatagaacatggacaagtactaatgtagctaggaaatcag
tgtgtgggatcatcagtatagaaaagaataaaacagaaatctggatttaa
aaatacagtcaataattttcctctagagacatagtggaaaatgactcaaa
tacaataatgagtagagacaggatcagacctgtaaaaaaaaaaaagaggg
gctggaagatgctcatcaggcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73789629_73789781
seq2: B6Ng01-002O18.b_481_628 (reverse)

seq1  TGTTTTGTTTTTGTTTTTGTTTTTTTTGAGACATGGTTTCTCTGTGTAGC  50
      ||||||| |||||||||   |||||| |||||| ||||||||||| ||||
seq2  TGTTTTG-TTTTGTTTT--GTTTTTTCGAGACAGGGTTTCTCTGTATAGC  47

seq1  CCTGGCTATCCTGG-ACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAG  99
      ||||||| |||||| ||||||| |||||||||||||||||| ||||||||
seq2  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  97

seq1  AAATTCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCA  149
      |||| |||||||||||||||||| |||||||||||||||||||||   ||
seq2  AAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTG---CA  144

seq1  CCAC  153
      ||||
seq2  CCAC  148

seq1: chr19_7769502_7770642
seq2: B6Ng01-002O18.g_69_1193 (reverse)

seq1  TCTTGCCTGATGAGCCATCTTTCCAGCCCCTCTTTTTTTTTTTTTTAACA  50
      |||||||||||||| |||| ||||||||||||||||||||||||   |||
seq2  TCTTGCCTGATGAG-CATC-TTCCAGCCCCTCTTTTTTTTTTTT---ACA  45

seq1  GTTCTGATTCTGTCCTCTAACTCATTATTGTATTTGGGTCATTTTCCACT  100
      | |||||| |||| |||| ||||||||||||||||| |||||||||||||
seq2  GGTCTGATCCTGT-CTCT-ACTCATTATTGTATTTGAGTCATTTTCCACT  93

seq1  AATTGTCTCTAGAGAAAATTTTAATTGACTGTATTTTTAAATCCAGGTTT  150
      |  ||||||||||| ||| ||  ||||||||||||||||||||||| |||
seq2  A--TGTCTCTAGAGGAAAATT--ATTGACTGTATTTTTAAATCCAGATTT  139

seq1  CTGTTTTATTCCTTTTCTATTACTGATGTTCCCACACACTGGTTTCCTAG  200
      |||||||||| |||||||| |||||||| |||||||||||| ||||||||
seq2  CTGTTTTATT-CTTTTCTA-TACTGATGATCCCACACACTGATTTCCTAG  187

seq1  CTGCCATTAGTACTTTGTCCATGTTCTATTTCATTCTTTTACATATATTT  250
      ||  ||||||||| |||||||||||||||||||||| |||||||||||||
seq2  CT-ACATTAGTAC-TTGTCCATGTTCTATTTCATTC-TTTACATATATTT  234

seq1  TAGATATATCTTTTAGAGTATTTGCCTAGGAAATCTCCCACAGAGACCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATCTTTTAGAGTATTTGCCTAGGAAATCTCCCACAGAGACCGT  284

seq1  TCTGAGTATGTTTCATTTTGAATAGTGGTGGATGTTCCACCTCAGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATGTTTCATTTTGAATAGTGGTGGATGTTCCACCTCAGTTTAC  334

seq1  TCTGATCTCAAAGTTGGTCTTCAACCGAATAGGCCATACTTCTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTCAAAGTTGGTCTTCAACCGAATAGGCCATACTTCTTTTTTTT  384

seq1  TCCTTGACATATCTATGATTTAATTATTCTTATAAAATTGTATTTGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACATATCTATGATTTAATTATTCTTATAAAATTGTATTTGATTG  434

seq1  TTATAATGTAGAAGATTCTTATAATGTAGAAATTTGGGTTTCAGATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTAGAAGATTCTTATAATGTAGAAATTTGGGTTTCAGATTCTT  484

seq1  TTTTTTTTCCTTTGACTTTCGACTTTACTGTGGTGTAACAGCCAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTTTGACTTTCGACTTTACTGTGGTGTAACAGCCAAGTTTT  534

seq1  GTACATAACTATAAATAGCTTTCTCGTGGCAATTCTGAATTTGGGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAACTATAAATAGCTTTCTCGTGGCAATTCTGAATTTGGGGAAGA  584

seq1  AAAGTCAATGACTAGTAACCAGTAGTCCTGTTGCTCTTTCTTACTATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATGACTAGTAACCAGTAGTCCTGTTGCTCTTTCTTACTATGCT  634

seq1  ACACCCACAGTCACACTATCTATCTCTACTTTCTCTGGACCCTGAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACAGTCACACTATCTATCTCTACTTTCTCTGGACCCTGAAGTAA  684

seq1  GTTGTAAGATGCATCATTGGTACTTTAGAGCTTAACACTTGGAGAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGATGCATCATTGGTACTTTAGAGCTTAACACTTGGAGAGGAAA  734

seq1  AAAAAGTGGTTTTGTGTAGCCATATCTGAAATTCCAGTTTCCATAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGGTTTTGTGTAGCCATATCTGAAATTCCAGTTTCCATAAGAAA  784

seq1  CACGCAGAGTGAAGAGCACCTCCTCTTTCCTGTGCAGGAGGAGCTCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGAGTGAAGAGCACCTCCTCTTTCCTGTGCAGGAGGAGCTCACAC  834

seq1  AAGGTCTCCGTGGTTTTGTGCACACAGGTTACTTGGATTACAATTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCCGTGGTTTTGTGCACACAGGTTACTTGGATTACAATTTTTCT  884

seq1  CCTGGTTGGTACTGTGGCTCTGCAGCAGTGACGTAGTCTTCCAAGGACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGGTACTGTGGCTCTGCAGCAGTGACGTAGTCTTCCAAGGACTG  934

seq1  AATACATTCAAACGTTGGCCTTTCATCAGGATCCATCTTCCAGCAAAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTCAAACGTTGGCCTTTCATCAGGATCCATCTTCCAGCAAAGAC  984

seq1  TCATCAATTCATGGAGGGATTCTGGACAGCCCTGAGGGCAAGGCATTCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATTCATGGAGGGATTCTGGACAGCCCTGAGGGCAAGGCATTCTG  1034

seq1  TACCCTGACTCTACTTGTTCCAGCACCTCACGCTTTACCACTCCTGGATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGACTCTACTTGTTCCAGCACCTCACGCTTTACCACTCCTGGATA  1084

seq1  TGGCACTCTTCCTTTTGTTACCAGCTCTGCCTGTAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCTTCCTTTTGTTACCAGCTCTGCCTGTAGAATTC  1125