BAC Information

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BAC

Clone NameB6Ng01-003A19
Chromosome12 (Build37)
Map Location 104,798,804 - 104,800,024
singlet/doubletsinglet
Overlap gene8430415E04Rik
Upstream geneChga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik
Downstream geneSerpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003A19.bB6Ng01-003A19.g
ACCDH840884DH840885
length1,195326
definitionDH840884|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A19, 5' end.DH840885|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgttccctctaataactgtatcggagacatccatgctcactgct
ccactgctttagttccccatgttaatccagcctgccactgactcttagag
gcccaggaccagagcttcctaactgccccattctcatctacacactaatc
aaactggccacacaatgtgaatagatggtaactctgatgttcaacgtctc
caatagctttccactgtcctcaaatccaatgtcactgatgttaattagtc
cagcctggtctctgttcatactccaccccgccccccactagccccaacta
cactttcggctgtttcaccaggctcttgcatctcaggccacctgctgctg
cttggccacagtgagctccagtgcatagaaggtctcctgttaactttact
actttgtctcagtgtccctgtttgttttacactcatcatttagcacttat
cacaagtgacagtcagcctttcctttgattacttgttgaagtctgggtca
cctctgcactacagcctcctagagaacaagttcactgacttttattcatc
tctacttcagtgattacaactgtgcctcagacctggcaagcagtgctcag
taaataaatacaagtgattgtaaatgtcattattactaagtgctcgctca
ctctggcatacaatgtggttttaccacaaaattaactaagaagtcagcag
gatggcaaggtgaacagagtgactatgagaaaaatcttatcacagcttat
cactgagaagtaatcactggaagaagccaggcagacctgaaaatgtgcca
gcctgaagtaccagtaagtgttgatgctctctgagcacagtgatttcaga
atcatctgcaaataggcatagtttcaccagtgaaaatgcactggtaactg
tttggccatctttgactgtgtaggaagctgttagaaagcactgtcatcac
tgttgtccagctaagtctatcttctgtgcttcactcaaatgttcctatgc
aaaatcagagcacacagtgattctgacatgccgtgctctcatcatctgtg
tgctatggactttctgatgtggttctcccacctgagacccttctactttt
ttgtacttcttcaatgatggcaagaaagaatgagaactagataaacagtg
cctatagtcacttaaaagaataaaagctgggcttagcttaactgc
tcccatgcaagagatggtgatagaaagactctggccttggggccttccta
ctctacagagtgagatcctgtcttaaaacaagatggggaaaaagagtgtg
tttgtgtatgttcatgtatatgtgtgtgtatgtttgtgtgtgtgtgtgtt
tgtgtgcttgattgtgtgtgtatgtatgcatgtttctatgtggtgtgttt
gggtgtccacatccttaagtgtgtatgtacccgggtgcgcgcttgcaccc
tgtgatcttttgggcatttcagaccgcgtttggtgcgctcgtattgcatt
atgctcatatgccgcatacctaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104798804_104800024
seq2: B6Ng01-003A19.b_44_1238 (reverse)

seq1  GCAGCTAAGCTATAGCCCCAGCTTTTTATTCTTTTTTAAGGTTGACTAGT  50
      |||| ||||||| || |||||| ||||||||  |||||||  |||||| |
seq2  GCAGTTAAGCTA-AG-CCCAGC-TTTTATTC--TTTTAAG--TGACTA-T  42

seq1  AAGCAACTGTTTA-CTAGGGTCTTCATCTCTCTTGCCCATACAATTTGAA  99
      | || |||||||| ||| | |||   ||| ||||| |||| ||  |||||
seq2  AGGC-ACTGTTTATCTA-GTTCTCATTCTTTCTTG-CCAT-CA--TTGAA  86

seq1  GGAGTTACAAAAAAGGTAGAAGGGTCTCAGGTGGGAGACACCACATCAGG  149
      | || ||||||||| ||||||||||||||||||||||| ||||||||| |
seq2  GAAG-TACAAAAAA-GTAGAAGGGTCTCAGGTGGGAGA-ACCACATCA-G  132

seq1  AAAGTCCATAAGCCACACAGATGGATGAAGGGGCACGGCATGGTCCAGAA  199
      ||||||||||   ||||||||| |||||  | ||||||||||   |||||
seq2  AAAGTCCATA--GCACACAGAT-GATGA--GAGCACGGCATG--TCAGAA  175

seq1  TCACTGTGTGGCTCTGATTTTGCATAGGAACATTTGAGTGAAGCACAGAA  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGT-GCTCTGATTTTGCATAGGAACATTTGAGTGAAGCACAGAA  224

seq1  GATAGACTTAGCTGGACAACAGTGATGACAGTGCTTTCTAAACAGCTTCC  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATAGACTTAGCTGGACAACAGTGATGACAGTGCTTTCT-AACAGCTTCC  273

seq1  TACACAGTCAAAGATGGCCAAACAGTTACCAGTGCATTTTCACTGGTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTCAAAGATGGCCAAACAGTTACCAGTGCATTTTCACTGGTGAA  323

seq1  ACTATGCCTATTTGCAGATGATTCTGAAATCACTGTGCTCAGAGAGCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCTATTTGCAGATGATTCTGAAATCACTGTGCTCAGAGAGCATC  373

seq1  AACACTTACTGGTACTTCAGGCTGGCACATTTTCAGGTCTGCCTGGCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTACTGGTACTTCAGGCTGGCACATTTTCAGGTCTGCCTGGCTTC  423

seq1  TTCCAGTGATTACTTCTCAGTGATAAGCTGTGATAAGATTTTTCTCATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGATTACTTCTCAGTGATAAGCTGTGATAAGATTTTTCTCATAG  473

seq1  TCACTCTGTTCACCTTGCCATCCTGCTGACTTCTTAGTTAATTTTGTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTTCACCTTGCCATCCTGCTGACTTCTTAGTTAATTTTGTGGT  523

seq1  AAAACCACATTGTATGCCAGAGTGAGCGAGCACTTAGTAATAATGACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACATTGTATGCCAGAGTGAGCGAGCACTTAGTAATAATGACATT  573

seq1  TACAATCACTTGTATTTATTTACTGAGCACTGCTTGCCAGGTCTGAGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCACTTGTATTTATTTACTGAGCACTGCTTGCCAGGTCTGAGGCA  623

seq1  CAGTTGTAATCACTGAAGTAGAGATGAATAAAAGTCAGTGAACTTGTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTAATCACTGAAGTAGAGATGAATAAAAGTCAGTGAACTTGTTCT  673

seq1  CTAGGAGGCTGTAGTGCAGAGGTGACCCAGACTTCAACAAGTAATCAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGCTGTAGTGCAGAGGTGACCCAGACTTCAACAAGTAATCAAAG  723

seq1  GAAAGGCTGACTGTCACTTGTGATAAGTGCTAAATGATGAGTGTAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTGACTGTCACTTGTGATAAGTGCTAAATGATGAGTGTAAAACA  773

seq1  AACAGGGACACTGAGACAAAGTAGTAAAGTTAACAGGAGACCTTCTATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGACACTGAGACAAAGTAGTAAAGTTAACAGGAGACCTTCTATGC  823

seq1  ACTGGAGCTCACTGTGGCCAAGCAGCAGCAGGTGGCCTGAGATGCAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCTCACTGTGGCCAAGCAGCAGCAGGTGGCCTGAGATGCAAGAG  873

seq1  CCTGGTGAAACAGCCGAAAGTGTAGTTGGGGCTAGTGGGGGGCGGGGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGAAACAGCCGAAAGTGTAGTTGGGGCTAGTGGGGGGCGGGGTGG  923

seq1  AGTATGAACAGAGACCAGGCTGGACTAATTAACATCAGTGACATTGGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAACAGAGACCAGGCTGGACTAATTAACATCAGTGACATTGGATT  973

seq1  TGAGGACAGTGGAAAGCTATTGGAGACGTTGAACATCAGAGTTACCATCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGTGGAAAGCTATTGGAGACGTTGAACATCAGAGTTACCATCT  1023

seq1  ATTCACATTGTGTGGCCAGTTTGATTAGTGTGTAGATGAGAATGGGGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTGTGTGGCCAGTTTGATTAGTGTGTAGATGAGAATGGGGCAG  1073

seq1  TTAGGAAGCTCTGGTCCTGGGCCTCTAAGAGTCAGTGGCAGGCTGGATTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGCTCTGGTCCTGGGCCTCTAAGAGTCAGTGGCAGGCTGGATTA  1123

seq1  ACATGGGGAACTAAAGCAGTGGAGCAGTGAGCATGGATGTCTCCGATACA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGAACTAAAGCAGTGGAGCAGTGAGCATGGATGTCTCCGATACA  1173

seq1  GTTATTAGAGGGAACAGAATTC  1221
      ||||||||||||||||||||||
seq2  GTTATTAGAGGGAACAGAATTC  1195