BAC Information

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BAC

Clone NameB6Ng01-003N18
Chromosome12 (Build37)X (Build37)
Map Location 61,467,819 - 61,468,10239,418,875 - 39,420,034
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N18.bB6Ng01-003N18.g
ACCDH841441DH841442
length4551,143
definitionDH841441|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N18, 5' end.DH841442|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,467,819 - 61,468,102)(39,418,875 - 39,420,034)
sequence
tttggaattttggcatatactgaagatcagttgagacatccagccttgtg
tattgaaccactaatggatacttggaccttctattcataggcagccactg
ttggcttagctggacactgcctgtaagtctcatatatatatatatatata
tatatatatatatatatatatatatatatatatatacatatgtatgtata
tgtatatatgagtcttttgcttgcatataacatgtgtgtaccatatgcat
gtccagtgttcacagaagcctggagagggacttgcatcctataagactgg
tgttaagatgtctgttaggcatcatatggatgctgggaactgcatctggg
tcctctggaagagcagtgagtgctcttaaccactgagctatctctctcta
gcccccgtactttttacatttaagtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtat
gaattcaaaccccaccactgccaacaaaacaactgcaagcaaatactgat
ctcacctgtccagcactcttaaataagcaaaccaacaaagctccatcttt
atcaacagaagggtcagaagttcaaggccatcctcaataggaagtttgag
gccagtcggagatgcaagggaccctgtctgggaaaaaaagaaaagaaaaa
aagtcccaggctaccctcatttgtcttgatattgtccaccatcaactcat
ttagaagaggctgaagtcgcttgtacctgtctctgtaggagctgaacagt
atgactcaaccctaggtctttctgaccattgcccagtctgatttctctgt
tcttaggcttgctccgcctcccccccacccccatctagcttgcctgaggc
tgagttaaatctttccattttgacttcaggataagagttaatcatcttag
ccttaattaagttcactctcctccaacacagtgctatggtgtcttctaag
ggaactatttaccctgccccagctcttaccagtttgcctgccctctagta
atttattgaaactaatttccttacctgaagattatattttctcagtctct
gtaatcttttattctttaaacttaaggtgtcattatagaatctttattat
tgtagttttgggctttttgttttgttttagtttgttttgtttgtttgttt
gtttgttttgaatctgggtctcactaaatagcccaggctatctcagaagt
cattgtgtagaccaggtcagcctgaaatcaatgaacgttatgtagcagtc
tctgactgctaggattgcaagctccagctatgtcacctagcttgtactgt
ttggcttggattttttgaatcaagacctcatgtatcctaggctggctgca
aacttgctatgtagcctaggatgacctttaattcctgttcgtcttgcctg
agaatggattgtccaccacgtttggtgagatagttttgatgtgttatgtg
tagtctgtctgctacatattcaagctgggctcaaatcatggcaatcttct
gcttaacatgctatgctaaaatgagcttaatagccactacactcaacagc
taaccaggtttttatttgtgaaataatatcatttactggttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61467819_61468102
seq2: B6Ng01-003N18.b_183_508 (reverse)

seq1  ATACACACACACACACACACACACACACACACACACACACACACACACTC  50
      ||||||||||||||||||||||||||||||||  | |   | | |     
seq2  ATACACACACACACACACACACACACACACACTTAAATGTAAAAAGTACG  50

seq1  AGACCT----ATAGGCAACTAAGGAATCCTGA-----CAGTGGGCTTCCC  91
       |  ||    | ||  | || ||   |   ||     || ||  ||||| 
seq2  GGGGCTAGAGAGAGATAGCTCAGTGGTTAAGAGCACTCACTGCTCTTCCA  100

seq1  CAGG-----GAAGAACATTACA------ATTGTTTGTATAGTA-ACAACT  129
       |||     || | |  |  ||      ||    ||  ||  | ||| ||
seq2  GAGGACCCAGATGCAGTTCCCAGCATCCATATGATGCCTAACAGACATCT  150

seq1  GATCA--ACCCTGAAA------AA---CATATC----TTTAAGT-AACAT  163
       | ||  |  || | |      ||   | | ||     ||  || |||| 
seq2  TAACACCAGTCTTATAGGATGCAAGTCCCTCTCCAGGCTTCTGTGAACAC  200

seq1  T--ACACTGATTTAGTAGTTGTAT-TTAGAAAATAGGAAAAAA--TACAC  208
      |  |||   || | |||     || ||| |    || |||| |   | | 
seq2  TGGACATGCATATGGTACACACATGTTATATGCAAGCAAAAGACTCATAT  250

seq1  ACACACACACACACATATATATATGTATATATATATATATACATATATAT  258
      | ||| | ||| |||||| ||||| |||||||||||||||| ||||||||
seq2  ATACATATACATACATATGTATATATATATATATATATATATATATATAT  300

seq1  ATATATATATATATATATATATATGA  284
      ||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATGA  326

seq1: chrX_39418875_39420034
seq2: B6Ng01-003N18.g_70_1212 (reverse)

seq1  TAAAACAGTAAATTTACATA-TATTTCAC-AATAAAAAACTGTGTTAGCT  48
      |||| ||||||||    ||| |||||||| |||||||| ||| |||||||
seq2  TAAACCAGTAAAT---GATATTATTTCACAAATAAAAACCTG-GTTAGCT  46

seq1  GGTTGGGTGTAGTGGCTTAATTAAGCTCATCTCAGCACTCAGCATGTTAA  98
       |||| |||||||||||  ||||||||||| | ||||   ||||||||||
seq2  -GTTGAGTGTAGTGGCT--ATTAAGCTCATTTTAGCA--TAGCATGTTAA  91

seq1  GGCAGAGGATTGCCATGAATTTGAGCCCAGCTTGGAATATGTAGCCAGAC  148
       ||||| |||||||||| ||||||||||||||| |||||||||| |||||
seq2  -GCAGAAGATTGCCATG-ATTTGAGCCCAGCTT-GAATATGTAG-CAGAC  137

seq1  AAGACTACACATAACACATCAAGACCTTATCTCACCAAACGTGGTGGAAC  198
       ||||||||||||||||||||| ||  |||||||||||||||||||| ||
seq2  -AGACTACACATAACACATCAAAAC--TATCTCACCAAACGTGGTGG-AC  183

seq1  AATCCCAATTCTCAGGCAAGACGAACAGGAATTAAAGGTCATCCTAGGCT  248
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  AATCC--ATTCTCAGGCAAGACGAACAGGAATTAAAGGTCATCCTAGGCT  231

seq1  ACATAGCAAGTTTGCAGCCAGCCTAGGATACATGAGGTCTTGATTCAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAAGTTTGCAGCCAGCCTAGGATACATGAGGTCTTGATTCAAAA  281

seq1  AATCCAAGCCAAACAGTACAAGCTAGGTGACATAGCTGGAGCTTGCAATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGCCAAACAGTACAAGCTAGGTGACATAGCTGGAGCTTGCAATC  331

seq1  CTAGCAGTCAGAGACTGCTACATAACGTTCATTGATTTCAGGCTGACCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTCAGAGACTGCTACATAACGTTCATTGATTTCAGGCTGACCTG  381

seq1  GTCTACACAATGACTTCTGAGATAGCCTGGGCTATTTAGTGAGACCCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACAATGACTTCTGAGATAGCCTGGGCTATTTAGTGAGACCCAGA  431

seq1  TTCAAAACAAACAAACAAACAAACAAAACAAACTAAAACAAAACAAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACAAACAAACAAACAAACAAAACAAACTAAAACAAAACAAAAAG  481

seq1  CCCAAAACTACAATAATAAAGATTCTATAATGACACCTTAAGTTTAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACTACAATAATAAAGATTCTATAATGACACCTTAAGTTTAAAGA  531

seq1  ATAAAAGATTACAGAGACTGAGAAAATATAATCTTCAGGTAAGGAAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATTACAGAGACTGAGAAAATATAATCTTCAGGTAAGGAAATTA  581

seq1  GTTTCAATAAATTACTAGAGGGCAGGCAAACTGGTAAGAGCTGGGGCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATAAATTACTAGAGGGCAGGCAAACTGGTAAGAGCTGGGGCAGG  631

seq1  GTAAATAGTTCCCTTAGAAGACACCATAGCACTGTGTTGGAGGAGAGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGTTCCCTTAGAAGACACCATAGCACTGTGTTGGAGGAGAGTGA  681

seq1  ACTTAATTAAGGCTAAGATGATTAACTCTTATCCTGAAGTCAAAATGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTAAGGCTAAGATGATTAACTCTTATCCTGAAGTCAAAATGGAA  731

seq1  AGATTTAACTCAGCCTCAGGCAAGCTAGATGGGGGTGGGGGGGAGGCGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAACTCAGCCTCAGGCAAGCTAGATGGGGGTGGGGGGGAGGCGGA  781

seq1  GCAAGCCTAAGAACAGAGAAATCAGACTGGGCAATGGTCAGAAAGACCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTAAGAACAGAGAAATCAGACTGGGCAATGGTCAGAAAGACCTA  831

seq1  GGGTTGAGTCATACTGTTCAGCTCCTACAGAGACAGGTACAAGCGACTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGTCATACTGTTCAGCTCCTACAGAGACAGGTACAAGCGACTTC  881

seq1  AGCCTCTTCTAAATGAGTTGATGGTGGACAATATCAAGACAAATGAGGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTCTAAATGAGTTGATGGTGGACAATATCAAGACAAATGAGGGT  931

seq1  AGCCTGGGACTTTTTTTCTTTTCTTTTTTTCCCAGACAGGGTCCCTTGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGACTTTTTTTCTTTTCTTTTTTTCCCAGACAGGGTCCCTTGCA  981

seq1  TCTCCGACTGGCCTCAAACTTCCTATTGAGGATGGCCTTGAACTTCTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGACTGGCCTCAAACTTCCTATTGAGGATGGCCTTGAACTTCTGAC  1031

seq1  CCTTCTGTTGATAAAGATGGAGCTTTGTTGGTTTGCTTATTTAAGAGTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTGATAAAGATGGAGCTTTGTTGGTTTGCTTATTTAAGAGTGC  1081

seq1  TGGACAGGTGAGATCAGTATTTGCTTGCAGTTGTTTTGTTGGCAGTGGTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGTGAGATCAGTATTTGCTTGCAGTTGTTTTGTTGGCAGTGGTG  1131

seq1  GGGTTTGAATTC  1160
      ||||||||||||
seq2  GGGTTTGAATTC  1143