BAC Information

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BAC

Clone NameB6Ng01-004A24
Chromosome12 (Build37)
Map Location 101,373,002 - 101,539,116
singlet/doubletdoublet
Overlap geneBC002230, Calm1, Ttc7b
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1
Downstream geneRps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004A24.bB6Ng01-004A24.g
ACCDH841576DH841577
length881928
definitionDH841576|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A24, 5' end.DH841577|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,373,002 - 101,373,884)(101,538,185 - 101,539,116)
sequence
gaattcttaatttcatttcattttaatgcactttaagaatagacagctag
aggtaattattttgaacatcattttttaataaatggaattttataaccac
actggctaacacatctgatttttagacaggggccttataattatgactta
tcattacagtttgatttaaaaactattaatttagggtatccaaccattta
tttcactgggttccaagtctgaacatgtaatagtaaagaagaaagaaatc
tcagttgcctgcaaagccaagtattttcagggcataaaaaaaaattcagc
gaccacacccagaacgagtttggtggtttcttataacactagctggcacc
taccactgcagaaaggtgaaggctgaaatgcacacacgcacagacacaca
tgcacacacatgcacacgtgcacacacacaagcaaacaacaaagcctgtg
catccacactcacggcagctctgctcaccacagccagaaacaaagcagcc
ttgatgtcagaggggtgattacagactgtggcttatctagaccatacact
gatgctcatcataaaatgaacaaacccctggcacaagcaacaataagctc
agagacttgagctaaacgagtaaagtcaccctaaacatcacagagcagac
aagggatgctgaggaggtggaggaggtggactgggctcccccacataaaa
tggtgtcagcagctgtaaaggacaagatggcagctcacacaatgagatgg
catgactgaggcaaccctacctctaaatgtgcaccttaaagggctcatag
tggactcgcatcatgtcacactgacggtcacagctcacactgcccaagat
gcagcagcccatgcattcgagtgcattcgag
gaattcagagtttatttatcgatggaaatatgtacaaagaagcttcaaat
ggaatatttaccgacattccttatacatgacagacacttggctaaacagg
aagatgatgttaataaaaaaaatgatttttaaatggacccctggcttttg
tctttcacaaagctggcagaccagacaacagccattgctcatctatgagg
tgtaggctctcccattccggggcctgccctgaacagtccgcctgggcaca
gggaggggcctacatcagctgtgcaggcagctgctagagagagcctcagg
cctggctccttattccaagtctgagctgcgtgtgttcttttctccttccc
ggcctctagcacctcactcccattcattcattcattcattcatgggtgag
gagacatggggtcaagacacttacctggggaaactacctggcaaaaaggg
cctgaggctttacctctgccagatgtcagggtctgccctgtgcagagagg
ctttggggactgggccacgtgggaaataccgtaattccatcattccataa
ttccataattccagtaatgctgactgtggcccagacaagtatggagggaa
aacagatgagtgtagacatggtaaagggtcacatagtggggggccacgcc
gccatctcacagagagtagtcagagacaccttagaaagcaacacaagctg
gagcaaactgggtgggtccctaagagaggggcacctcctacagagacaga
gccatagagcatcctaccctatgagcccccagcacatccatgctagggta
gagttggtgacacactgtctgagggcctggggcggtaaaagggacttccc
agagaagctggccatgtggtctgcccctctccttgaagtccttccctcac
gatagaagcactccagcatcagcacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101373002_101373884
seq2: B6Ng01-004A24.b_44_924

seq1  GAATTCTTAATTTCATTTCATTTTAATGCACTTTAAGAATAGACAGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTTCATTTCATTTTAATGCACTTTAAGAATAGACAGCTAG  50

seq1  AGGTAATTATTTTGAACATCATTTTTTAATAAATGGAATTTTATAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTATTTTGAACATCATTTTTTAATAAATGGAATTTTATAACCAC  100

seq1  ACTGGCTAACACATCTGATTTTTAGACAGGGGCCTTATAATTATGACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAACACATCTGATTTTTAGACAGGGGCCTTATAATTATGACTTA  150

seq1  TCATTACAGTTTGATTTAAAAACTATTAATTTAGGGTATCCAACCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAGTTTGATTTAAAAACTATTAATTTAGGGTATCCAACCATTTA  200

seq1  TTTCACTGGGTTCCAAGTCTGAACATGTAATAGTAAAGAAGAAAGAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGGTTCCAAGTCTGAACATGTAATAGTAAAGAAGAAAGAAATC  250

seq1  TCAGTTGCCTGCAAAGCCAAGTATTTTCAGGGCATAGAAAAAAATTCAGC  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGTTGCCTGCAAAGCCAAGTATTTTCAGGGCATAAAAAAAAATTCAGC  300

seq1  GACCACACCCAGAACGAGTTTGGTGGTTTCTTATAACACTAGCTGGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACCCAGAACGAGTTTGGTGGTTTCTTATAACACTAGCTGGCACC  350

seq1  TACCACTGCAGAAAGGTGAAGGCTGAAATGCACACACGCACAGACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGCAGAAAGGTGAAGGCTGAAATGCACACACGCACAGACACACA  400

seq1  TGCACACACATGCACACGTGCACACACACAAGCAAACAACAAAGCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACACATGCACACGTGCACACACACAAGCAAACAACAAAGCCTGTG  450

seq1  CATCCACACTCAGGGCAGCTCTGCTCACCACAGCCAGAAACAAAGCAGCC  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCCACACTCACGGCAGCTCTGCTCACCACAGCCAGAAACAAAGCAGCC  500

seq1  TTGATGTCAGAGGGGTGATTACAGACTGTGGCTTATCTAGACCATACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCAGAGGGGTGATTACAGACTGTGGCTTATCTAGACCATACACT  550

seq1  GATGCTCAGCATAAAATGAACAAACCCCTGGCACAAGCAACAATAAGCTC  600
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCATCATAAAATGAACAAACCCCTGGCACAAGCAACAATAAGCTC  600

seq1  AGAGACTTGAGCTAAACGAGTAAAGTCACCCTAAACATCACAGAGCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTGAGCTAAACGAGTAAAGTCACCCTAAACATCACAGAGCAGAC  650

seq1  AAGGGATGCTGAGGAGGTGGAGGAGGTGGACTGGGCAGCAACAACATAAA  700
      ||||||||||||||||||||||||||||||||||||  |  | |||||||
seq2  AAGGGATGCTGAGGAGGTGGAGGAGGTGGACTGGGC-TCCCCCACATAAA  699

seq1  ATGGTGTCAGCAGCTGTAAAGGACAAGATGGCAGCTCAAAGAATGATAGG  750
      |||||||||||||||||||||||||||||||||||||| | ||||| | |
seq2  ATGGTGTCAGCAGCTGTAAAGGACAAGATGGCAGCTCACACAATGAGATG  749

seq1  GCATGACTGGGGCAGCCCTACCTCTAAATGTGCACCTTAAAGGGCTCAAA  800
      ||||||||| |||| ||||||||||||||||||||||||||||||||| |
seq2  GCATGACTGAGGCAACCCTACCTCTAAATGTGCACCTTAAAGGGCTCATA  799

seq1  GTGGACTCG-GTCATGGCACACTGAGGGTCACAGCTCACAACTGCCCAAG  849
      |||||||||  ||||| |||||||| ||||||||||||| ||||||||||
seq2  GTGGACTCGCATCATGTCACACTGACGGTCACAGCTCAC-ACTGCCCAAG  848

seq1  ATGCAGCAGCCCATGCATCCGAGGTGCATCCGAG  883
      |||||||||||||||||| ||| |||||| ||||
seq2  ATGCAGCAGCCCATGCATTCGA-GTGCATTCGAG  881

seq1: chr12_101538185_101539116
seq2: B6Ng01-004A24.g_68_995 (reverse)

seq1  AAAGTGGCTGATGTTGGAGTGCTTCTATCCTGAGTGAAGGACATCAAGGA  50
      ||||| ||||||| ||||||||||||||| |||| ||||||| |||||||
seq2  AAAGT-GCTGATGCTGGAGTGCTTCTATCGTGAGGGAAGGACTTCAAGGA  49

seq1  GAGGTGGCAGACCACATGGCCAGCTTCTCTTGGGAAGTCCCTTTTACCGC  100
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGG-GGCAGACCACATGGCCAGCTTCTC-TGGGAAGTCCCTTTTACCGC  97

seq1  CCCAGGCCCTCAGCCAGTGTGTCACCAACTCTACCCTAGCATGGCTGTGC  150
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  CCCAGGCCCTCAGACAGTGTGTCACCAACTCTACCCTAGCATGGATGTGC  147

seq1  TGGGGGCTCATAGGGTAGGATGCTCTCTGGGCTCTGTCTCTTTAGGAGGT  200
      |||||||||||||||||||||||||| | |||||||||||| ||||||||
seq2  TGGGGGCTCATAGGGTAGGATGCTCTAT-GGCTCTGTCTCTGTAGGAGGT  196

seq1  GCCCCTCTCTTAGGGACCCACCCAGTTTGCTCCAGCTTGTGTTGCTTTAT  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCCCTCTCTTAGGGACCCACCCAGTTTGCTCCAGCTTGTGTTGCTTTCT  246

seq1  AAGGTGTCTCTGACTACTCTCTGTGAGATGGCGGCGTGGCCCCCCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTCTCTGACTACTCTCTGTGAGATGGCGGCGTGGCCCCCCACTAT  296

seq1  GTGACCCTTTACCATGTCTACACTCATCTGTTTTCCCTCCATACTTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTTTACCATGTCTACACTCATCTGTTTTCCCTCCATACTTGTCT  346

seq1  GGGCCACAGTCAGCATTACTGGAATTATGGAATTATGGAATGATGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACAGTCAGCATTACTGGAATTATGGAATTATGGAATGATGGAATT  396

seq1  ACGGTATTTCCCACGTGGCCCAGTCCCCAAAGCCTCTCTGCACAGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATTTCCCACGTGGCCCAGTCCCCAAAGCCTCTCTGCACAGGGCAG  446

seq1  ACCCTGACATCTGGCAGAGGTAAAGCCTCAGGCCCTTTTTGCCAGGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACATCTGGCAGAGGTAAAGCCTCAGGCCCTTTTTGCCAGGTAGT  496

seq1  TTCCCCAGGTAAGTGTCTTGACCCCATGTCTCCTCACCCATGAATGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGGTAAGTGTCTTGACCCCATGTCTCCTCACCCATGAATGAATG  546

seq1  AATGAATGAATGGGAGTGAGGTGCTAGAGGCCGGGAAGGAGAAAAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGGGAGTGAGGTGCTAGAGGCCGGGAAGGAGAAAAGAACA  596

seq1  CACGCAGCTCAGACTTGGAATAAGGAGCCAGGCCTGAGGCTCTCTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGCTCAGACTTGGAATAAGGAGCCAGGCCTGAGGCTCTCTCTAGC  646

seq1  AGCTGCCTGCACAGCTGATGTAGGCCCCTCCCTGTGCCCAGGCGGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTGCACAGCTGATGTAGGCCCCTCCCTGTGCCCAGGCGGACTGT  696

seq1  TCAGGGCAGGCCCCGGAATGGGAGAGCCTACACCTCATAGATGAGCAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGGCCCCGGAATGGGAGAGCCTACACCTCATAGATGAGCAATG  746

seq1  GCTGTTGTCTGGTCTGCCAGCTTTGTGAAAGACAAAAGCCAGGGGTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTCTGGTCTGCCAGCTTTGTGAAAGACAAAAGCCAGGGGTCCAT  796

seq1  TTAAAAATCATTTTTTTTATTAACATCATCTTCCTGTTTAGCCAAGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCATTTTTTTTATTAACATCATCTTCCTGTTTAGCCAAGTGTC  846

seq1  TGTCATGTATAAGGAATGTCGGTAAATATTCCATTTGAAGCTTCTTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTATAAGGAATGTCGGTAAATATTCCATTTGAAGCTTCTTTGTA  896

seq1  CATATTTCCATCGATAAATAAACTCTGAATTC  932
      ||||||||||||||||||||||||||||||||
seq2  CATATTTCCATCGATAAATAAACTCTGAATTC  928