BAC Information

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BAC

Clone NameB6Ng01-004H11
Chromosome12 (Build37)
Map Location 63,205,323 - 63,342,622
singlet/doubletdoublet
Overlap geneLOC665713, LOC622746
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H11.bB6Ng01-004H11.g
ACCDH841868DH841869
length1,1961,078
definitionDH841868|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H11, 5' end.DH841869|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,341,424 - 63,342,622)(63,205,323 - 63,206,417)
sequence
gaattcactggttttgatgaaagcaatctacagattaaatgcaatttcca
tcaaaattccaactcaattcttcatagttagaaagaactgtttgcaaatt
catctgggatttaaaaaacccaggatagcaaagactattctcaacaataa
aacagtattgacaatatgaactcactctcaaaaatttagataaaggagac
aataaaagcacaaattttattttattctttctttattaatgatctgaaaa
ttgtgtgtccagagcatttgatgatattttaatactccacaccttgtcac
tagggtcacacatttttttacttattcaagaaatagtcactgaactccta
tgctggcaatatgcttaattaaggaatccgcaatggtgaccaaataaaag
aatatgtgctgcaattgaaaacatagtcagaaatgaataagttattttaa
taccactataaatgtggatatgaaatactacagtataaaacagtatgctg
taaagtgtttggcagcattacaaagcatacatatttacttaaactcctgt
aaatattgcatacatggaatattttctttaagtggttaataatattaggt
tatactaaatgtgtcattgcagcttgaatgaagattttcagaaaatgtac
taacatttgtgtgagtcactatgtgtttgtgtgcattaaaaacatttatg
ggcacctagattagaaccaaaacaacttatctttaagttcttgtgtctat
ttgttgttgagaatgtgttagagaaaaaaaaaaaaaaaaaacgtctccaa
aacatattcgttattactaaggaatgagaattcacaaaaaatcatgaaac
tgtcttttagaaactctatatttgcaatttttagataaattgcattgtga
aatattattttacctataacatatttcaaacttcctagcaaggtatctat
gtgactttttactcaggcattacttctatagtacaaaatctagagagtct
ttttttttataataaagtgaaatgattgagtaataaaatataagaacacc
agaagaattgctttttatcatctagaaagaaaaaagcatcatatagatga
gttatagaaatcttggcatttgagcgaatgactactttaagatgtaccca
tgactgaataaagatcttacttgatggttccttatgagatgcatca
gaattcacacttgcagaaaagtggatgtaacagaggatcattatgtaaag
taaaataagccttacttagaaacgacaaccacgtgttttctcacatatgt
agaattcagatttcagtttatatatatatatgttcttgagtgtatgcatg
ttcatatgtatagcagattttcagtgagggtaggggaacaggtaagatca
ttggaacaagtgccatgtgtaagacagatggacagttaggaggagaaaag
accacaaagcaggtaaaggggctgatggagcaatgggcagaaaagaacaa
catataatgagtggcatgtggatggaaatgccactttgaaatccatgaca
cccaatgtattattcaaaaaccataaaggatagtttctggcatgactcag
tgggctctttgattccatgtaagaaagctctaaatgccaccatagcagat
atctattcctggtctccctccttcaacctgtcatgtagtgatagtgaaag
aaacttgtttccaacaagttaattcggaacctcaaaccatgattttagtc
tttgctaaggtgaaaattacaccatggctcaggaatgattgaaaaaaagt
gcaaccagcaatgttttgaaaggctatgcagcaaaattctacatcttctg
tcattcttcctcataatcagcatgaaacattgatttaggaggaaaacaag
ctttgggcctaaaatgtggtaaagttcaagaggtatataactggccttat
atgaaaaaaaaattctttaaagaaatttacattcaggaaggtgggaaatg
actccctcagtaacatgcttagttcatatgcataaggatctccagggctg
ctggtaggctctaagttcagtgaaaagccctttctaccattatgttaagc
acaatatgttttttccaaatgtaatacctcaatggccccatttataatgc
atagacataaacacattgtttgctggccgattataatagtaaatccctga
caaacagaggtatagcgagtattcttgtgagacatcactattgttttctg
gtaaataactgacacaaattctgtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63341424_63342622
seq2: B6Ng01-004H11.b_48_1243 (reverse)

seq1  TGATGCATCTCATAGGGAACAATC-AGTAAGATACTTTA-TCAGTCATGG  48
      |||||||||||||| ||||| ||| |||||||| ||||| ||||||||||
seq2  TGATGCATCTCATAAGGAACCATCAAGTAAGAT-CTTTATTCAGTCATGG  49

seq1  TTACATCTT-AAGTAGTCATTCTGCTCAGATGCCAAGA-TTCTATAACTC  96
       |||||||| |||||||||||| ||||| ||||||||| |||||||||||
seq2  GTACATCTTAAAGTAGTCATTC-GCTCAAATGCCAAGATTTCTATAACTC  98

seq1  ATCTTAATATGATGCTTTTCTCTTTCTAGATGATAAAAAGCATTTCTTCT  146
      ||||  ||||||||||||| |||||||||||||||||||||| |||||||
seq2  ATCT--ATATGATGCTTTTTTCTTTCTAGATGATAAAAAGCAATTCTTCT  146

seq1  TGGTTGTTCTTATATTTTTATTACTCAATCATTTCAACTTTATTATTAAA  196
        | |||||||||| |||||||||||||||||||| |||||||||| |||
seq2  --GGTGTTCTTATA-TTTTATTACTCAATCATTTC-ACTTTATTATAAAA  192

seq1  AAAAAGACTCTCTAGATTTTGTACTATAGAAGTAATGCCTGAGTAAAAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACTCTCTAGATTTTGTACTATAGAAGTAATGCCTGAGTAAAAAG  242

seq1  TCACATAGATACCTTGCTAGGAAGTTTGAAATATGTTATAGGTAAAATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGATACCTTGCTAGGAAGTTTGAAATATGTTATAGGTAAAATAA  292

seq1  TATTTCACAATGCAATTTATCTAAAAATTGCAAATATAGAGTTTCTAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACAATGCAATTTATCTAAAAATTGCAAATATAGAGTTTCTAAAA  342

seq1  GACAGTTTCATGATTTTTTGTGAATTCTCATTCCTTAGTAATAACGAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTCATGATTTTTTGTGAATTCTCATTCCTTAGTAATAACGAATA  392

seq1  TGTTTTGGAGACG-TTTTTTTTTTTTTTTTTCTCTAACACATTCTCAACA  445
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGAGACGTTTTTTTTTTTTTTTTTTCTCTAACACATTCTCAACA  442

seq1  ACAAATAGACACAAGAACTTAAAGATAAGTTGTTTTGGTTCTAATCTAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGACACAAGAACTTAAAGATAAGTTGTTTTGGTTCTAATCTAGG  492

seq1  TGCCCATAAATGTTTTTAATGCACACAAACACATAGTGACTCACACAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATAAATGTTTTTAATGCACACAAACACATAGTGACTCACACAAAT  542

seq1  GTTAGTACATTTTCTGAAAATCTTCATTCAAGCTGCAATGACACATTTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTACATTTTCTGAAAATCTTCATTCAAGCTGCAATGACACATTTAG  592

seq1  TATAACCTAATATTATTAACCACTTAAAGAAAATATTCCATGTATGCAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCTAATATTATTAACCACTTAAAGAAAATATTCCATGTATGCAAT  642

seq1  ATTTACAGGAGTTTAAGTAAATATGTATGCTTTGTAATGCTGCCAAACAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGGAGTTTAAGTAAATATGTATGCTTTGTAATGCTGCCAAACAC  692

seq1  TTTACAGCATACTGTTTTATACTGTAGTATTTCATATCCACATTTATAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCATACTGTTTTATACTGTAGTATTTCATATCCACATTTATAGT  742

seq1  GGTATTAAAATAACTTATTCATTTCTGACTATGTTTTCAATTGCAGCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAAATAACTTATTCATTTCTGACTATGTTTTCAATTGCAGCACA  792

seq1  TATTCTTTTATTTGGTCACCATTGCGGATTCCTTAATTAAGCATATTGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTATTTGGTCACCATTGCGGATTCCTTAATTAAGCATATTGCC  842

seq1  AGCATAGGAGTTCAGTGACTATTTCTTGAATAAGTAAAAAAATGTGTGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGAGTTCAGTGACTATTTCTTGAATAAGTAAAAAAATGTGTGAC  892

seq1  CCTAGTGACAAGGTGTGGAGTATTAAAATATCATCAAATGCTCTGGACAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGACAAGGTGTGGAGTATTAAAATATCATCAAATGCTCTGGACAC  942

seq1  ACAATTTTCAGATCATTAATAAAGAAAGAATAAAATAAAATTTGTGCTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTCAGATCATTAATAAAGAAAGAATAAAATAAAATTTGTGCTTT  992

seq1  TATTGTCTCCTTTATCTAAATTTTTGAGAGTGAGTTCATATTGTCAATAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTCCTTTATCTAAATTTTTGAGAGTGAGTTCATATTGTCAATAC  1042

seq1  TGTTTTATTGTTGAGAATAGTCTTTGCTATCCTGGGTTTTTTAAATCCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTGTTGAGAATAGTCTTTGCTATCCTGGGTTTTTTAAATCCCA  1092

seq1  GATGAATTTGCAAACAGTTCTTTCTAACTATGAAGAATTGAGTTGGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTTGCAAACAGTTCTTTCTAACTATGAAGAATTGAGTTGGAATT  1142

seq1  TTGATGGAAATTGCATTTAATCTGTAGATTGCTTTCATCAAAACCAGTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAAATTGCATTTAATCTGTAGATTGCTTTCATCAAAACCAGTGA  1192

seq1  ATTC  1199
      ||||
seq2  ATTC  1196

seq1: chr12_63205323_63206417
seq2: B6Ng01-004H11.g_67_1144

seq1  GAATTCACACTTGCAGAAAAGTGGATGTAACAGAGGATCATTATGTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTTGCAGAAAAGTGGATGTAACAGAGGATCATTATGTAAAG  50

seq1  TAAAATAAGCCTTACTTAGAAACGACAACCACGTGTTTTCTCACATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGCCTTACTTAGAAACGACAACCACGTGTTTTCTCACATATGT  100

seq1  AGAATTCAGATTTCAGTTTATATATATATATGTTCTTGAGTGTATGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAGATTTCAGTTTATATATATATATGTTCTTGAGTGTATGCATG  150

seq1  TTCATATGTATAGCAGATTTTCAGTGAGGGTAGGGGAACAGGTAAGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGTATAGCAGATTTTCAGTGAGGGTAGGGGAACAGGTAAGATCA  200

seq1  TTGGAACAAGTGCCATGTGTAAGACAGATGGACAGTTAGGAGGAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACAAGTGCCATGTGTAAGACAGATGGACAGTTAGGAGGAGAAAAG  250

seq1  ACCACAAAGCAGGTAAAGGGGCTGATGGAGCAATGGGCAGAAAAGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAGCAGGTAAAGGGGCTGATGGAGCAATGGGCAGAAAAGAACAA  300

seq1  CATATAATGAGTGGCATGTGGATGGAAATGCCACTTTGAAATCCATGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATGAGTGGCATGTGGATGGAAATGCCACTTTGAAATCCATGACA  350

seq1  CCCAATGTATTATTCAAAAACCATAAAGGATAGTTTCTGGCATGACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTATTATTCAAAAACCATAAAGGATAGTTTCTGGCATGACTCAG  400

seq1  TGGGCTCTTTGATTCCATGTAAGAAAGCTCTAAATGCCACCATAGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTTTGATTCCATGTAAGAAAGCTCTAAATGCCACCATAGCAGAT  450

seq1  ATCTATTCCTGGTCTCCCTCCTTCAACCTGTCATGTAGTGATAGTGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCCTGGTCTCCCTCCTTCAACCTGTCATGTAGTGATAGTGAAAG  500

seq1  AAACTTGTTTCCAACAAGTTAATTCGGAACCTCAAACCATGATTTTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTTTCCAACAAGTTAATTCGGAACCTCAAACCATGATTTTAGTC  550

seq1  TTTGCTAAGGTGAAAATTACACCATGGCTCAGGAATGATTGAAAAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAGGTGAAAATTACACCATGGCTCAGGAATGATTGAAAAAAAGT  600

seq1  GCAACCAGCAATGTTTTGAAAGGCTATGCAGCAAAATTCTACATCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAGCAATGTTTTGAAAGGCTATGCAGCAAAATTCTACATCTTCTG  650

seq1  TCATTCTTCCTCATAATCAGCATGAAACATTGATTTAGGAGGAAAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCCTCATAATCAGCATGAAACATTGATTTAGGAGGAAAACAAG  700

seq1  CTTTGGGCCTAAAATGTGGTAAAGTTCAAGAGGTATATAACTGGCCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCCTAAAATGTGGTAAAGTTCAAGAGGTATATAACTGGCCTTAT  750

seq1  ATGAAAAAAAAATTCTTTAAAGAAATTTACATTCAGGAAGGTGGGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAAATTCTTTAAAGAAATTTACATTCAGGAAGGTGGGAAATG  800

seq1  ACTCCCTCAGTAACATGCTTAGTTCATATGCATAAGGATCTCCAGGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCAGTAACATGCTTAGTTCATATGCATAAGGATCTCCAGGGCTG  850

seq1  CTGGTAGGCTCTAAGTTCAGTGAAAAGCCCTTTCTACCATTATGTTAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGCTCTAAGTTCAGTGAAAAGCCCTTTCTACCATTATGTTAAGC  900

seq1  ACAATATGTTTTTTCCAAAATGTAATACCTCAATGGCCCCATTTATAATG  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAATATGTTTTTTCC-AAATGTAATACCTCAATGGCCCCATTTATAATG  949

seq1  CATAGACAATAAACACATTGTTTGCTGGCCGATTAATAAATAGTAAATCC  1000
      ||||||| |||||||||||||||||||||||||||   ||||||||||||
seq2  CATAGAC-ATAAACACATTGTTTGCTGGCCGATTA--TAATAGTAAATCC  996

seq1  CTGGAACAAACAGAGGTATAGCGAAGTATTCTTGGTGAGAACCATCACTA  1050
      |||  |||||||||||||||||| ||||||||| ||||||  ||||||||
seq2  CTG--ACAAACAGAGGTATAGCG-AGTATTCTT-GTGAGA--CATCACTA  1040

seq1  TTGGTTTTTCTGGGTTAAAATAAACTGACACAAAATTCTGCCATT  1095
      |||  ||||||||  ||||   ||||||||| |||||||| ||||
seq2  TTG--TTTTCTGG--TAAA--TAACTGACAC-AAATTCTGTCATT  1078