BAC Information

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BAC

Clone NameB6Ng01-004J04
Chromosome12 (Build37)
Map Location 59,375,708 - 59,550,177
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J04.bB6Ng01-004J04.g
ACCDH841942DH841943
length9971,137
definitionDH841942|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J04, 5' end.DH841943|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,375,708 - 59,376,706)(59,549,039 - 59,550,177)
sequence
gaattccacctgtgatagcagccttcttggaatgacatctaaatatgcac
tcaggaaaaagtgggggctacctagcaaagtaaacaatggtctcttaggg
gtttttttgggttctctgcccacaaacgctgagcacatatccctgctcac
tcatcctggagtggctctgagaaagtgtagtgaagaaagcagaggttggg
acagagaaggcttcttcagaacatcagaagatctttttcccactttgtga
tggagagaattcagaaagggctttgttgtattcctgtgctaggggactga
caacatatgactttgctacacttcagcagatgagtaggactctaaactca
gcagggagggagacaatccgctcttctctctgcctcccttcactactgca
gccgcctgtcttttgatgcagattcagggagttcttactttggtggtgtc
ctggaaaaaataactatttttaaaaggcacttcagtcccttcatttttaa
atattattttttcttttgttgaaaaacaggttcttttctcatacaacata
tcctgattatagtttccttttcctctcctcctccaacttcctccccacct
cccatctgctccagatctactatctttctgtatctcattagaaaagaaca
ggcttaaagaagaactggtatagacatgtagaccctgtgcttgatgcttc
aatttctgtgagcttttatgtgctttccttagttaattcagagggccttg
ttgtcctggtgtcctccaccctctctgaatctcacaatccttttggccca
actttcatagggttctccaagctctgaggtgaactatttgatggaacctc
caatttaaactatttttttctcttcataatttcagcctctgggtctttct
ttctgcatctctttccatctgcttctggaggaagcctctctgacgatgcc
tggacagatgccaaactatgagtattgttagaaatttctttagatca
gaattccattgatcaaatggaagtatataaaaaagataacagctcaaatt
agccatctaaaatagcagtgcatttttataaccttgcttggttgattatt
taaattatcactatattccagtttggctctatcagtgcttagcaactgcc
tagggcttcagggagaggggagttccccttatttgtctcttgggacttgg
ggtggggggaatagaagttcatgggttctgtgtcatggaggaggagagag
tggaaactctcaggcagtgtgtagtcacagagaggccatagaggacatga
gtgtggaaccttggaaagaatgcgtggccacatcagaatgggactctgtg
caggtaaggagtgaactctttcactagggatgagtccagctcacagccac
caagggagtggctccatacaataggctcagcttctgtggtcactgaggtg
atcttgagcctttaatttttcaaatagcgcttctagtttcatgtttttat
tttcccaatacatagactgagaaaataactactggcatattagccaaaat
tttcagttttataacagaaatcaaaggaaggagccacttcctaattccta
gaaacaattcttctcagttgtactgcatagtgatgattgaaaattgcaag
aaaataagggaaatgtgttagtacagtcttgagaataactgagcgcttcc
agttactgatgcgacttttttttcagttcaggaaaagttattatattttt
aaacacataaaaacaaaatgagaaacatgctttatgcattttttttgcac
aaattcagaatggtaactcatcttagttttaaacaatctaaaaacctagt
ggatattgccacattcatttacctcctgttttacttgggttgaacctacg
gccttacacgtgccatggaagtgctgtaccactgagaaatacccccaccc
cccaccccagcttttcttgttgctagccttaacaaaaaactttgggcaaa
ggaaactacaaatcttccccaggggagaaaatcaagcaatctgggccctt
ttaaaggctaatacacagaaaaatcattcctctgcctatatttttactaa
ggacagcctggggtgtgacatttgcttctcaagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59375708_59376706
seq2: B6Ng01-004J04.b_45_1041

seq1  GAATTCCACCTGTGATAGCAGCCTTCTTGGAATGACATCTAAATATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGTGATAGCAGCCTTCTTGGAATGACATCTAAATATGCAC  50

seq1  TCAGGAAAAAGTGGGGGCTACCTAGCAAAGTAAACAATGGTCTCTTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAAAGTGGGGGCTACCTAGCAAAGTAAACAATGGTCTCTTAGGG  100

seq1  GTTTTTTTGGGTTCTCTGCCCACAAACGCTGAGCACATATCCCTGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGGGTTCTCTGCCCACAAACGCTGAGCACATATCCCTGCTCAC  150

seq1  TCATCCTGGAGTGGCTCTGAGAAAGTGTAGTGAAGAAAGCAGAGGTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGAGTGGCTCTGAGAAAGTGTAGTGAAGAAAGCAGAGGTTGGG  200

seq1  ACAGAGAAGGCTTCTTCAGAACATCAGAAGATCTTTTTCCCACTTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGGCTTCTTCAGAACATCAGAAGATCTTTTTCCCACTTTGTGA  250

seq1  TGGAGAGAATTCAGAAAGGGCTTTGTTGTATTCCTGTGCTAGGGGACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAATTCAGAAAGGGCTTTGTTGTATTCCTGTGCTAGGGGACTGA  300

seq1  CAACATATGACTTTGCTACACTTCAGCAGATGAGTAGGACTCTAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATGACTTTGCTACACTTCAGCAGATGAGTAGGACTCTAAACTCA  350

seq1  GCAGGGAGGGAGACAATCCGCTCTTCTCTCTGCCTCCCTTCACTACTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGGAGACAATCCGCTCTTCTCTCTGCCTCCCTTCACTACTGCA  400

seq1  GCCGCCTGTCTTTTGATGCAGATTCAGGGAGTTCTTACTTTGGTGGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCTGTCTTTTGATGCAGATTCAGGGAGTTCTTACTTTGGTGGTGTC  450

seq1  CTGGAAAAAATAACTATTTTTAAAAGGCACTTCAGTCCCTTCATTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAAATAACTATTTTTAAAAGGCACTTCAGTCCCTTCATTTTTAA  500

seq1  ATATTATTTTTTCTTTTGTTGAAAAACAGGTTCTTTTCTCATACAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTTTTCTTTTGTTGAAAAACAGGTTCTTTTCTCATACAACATA  550

seq1  TCCTGATTATAGTTTCCTTTTCCTCTCCTCCTCCAACTTCCTCCCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTATAGTTTCCTTTTCCTCTCCTCCTCCAACTTCCTCCCCACCT  600

seq1  CCCATCTGCTCCAGATCTACTATCTTTCTGTATCTCATTAGAAAAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGCTCCAGATCTACTATCTTTCTGTATCTCATTAGAAAAGAACA  650

seq1  GGCTTAAAGAAGAACTGGTATAGACATGTAGACCCTGTGCTTGATGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAAGAAGAACTGGTATAGACATGTAGACCCTGTGCTTGATGCTTC  700

seq1  AATTTCTGTGAGCTTTTATGTGCTTTCCTTAGTTAATTCAGAGGGCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTGAGCTTTTATGTGCTTTCCTTAGTTAATTCAGAGGGCCTTG  750

seq1  TTGTCCTGGTGTCCTCCACCCTCTCTGAATCTCACAATCCTTTTGGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGTGTCCTCCACCCTCTCTGAATCTCACAATCCTTTTGGCCCA  800

seq1  ACTTTCATAGGGTTCTCCAAGCTCTGAGGTGAACTATTTGATGGAAACCT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTTCATAGGGTTCTCCAAGCTCTGAGGTGAACTATTTGATGG-AACCT  849

seq1  CCAATTTAAACTATTTTTTTCTCTTCATAATTTCAGCCTCTGGGTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTAAACTATTTTTTTCTCTTCATAATTTCAGCCTCTGGGTCTTTC  899

seq1  TTTCTGCATCTCTTTCCATCTGCTTCTGGAGGAAGCCTCTCTGACGATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCATCTCTTTCCATCTGCTTCTGGAGGAAGCCTCTCTGACGATGC  949

seq1  CTGGACAAGATGCCAAACTATGAGTATTGTTAGAAATTTCTTTAGATCA  999
      |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAC-AGATGCCAAACTATGAGTATTGTTAGAAATTTCTTTAGATCA  997

seq1: chr12_59549039_59550177
seq2: B6Ng01-004J04.g_64_1200 (reverse)

seq1  AAGTCT--AGAAGCAAA-GTCACAACTCCAGGCCTGTCCTTTAAGATAAA  47
      ||||||  ||||||||| ||||| || ||||| |||||| |||  | |||
seq2  AAGTCTTGAGAAGCAAATGTCAC-ACCCCAGG-CTGTCC-TTAGTAAAAA  47

seq1  TATAAGGCAGAGAATTGATTTTTCTTGTTATTTAGCCTTTAAAAGGGCAC  97
      ||| |||||||| | ||||||||| |||   ||||||||||||||||| |
seq2  TAT-AGGCAGAGGAATGATTTTTC-TGTGTATTAGCCTTTAAAAGGGC-C  94

seq1  CAGATTTTGCTTGATTTTTTCCCCTGGGG-AGATTTGTAGTTTCCTTTGC  146
      ||||  |||||||||||| |||||||||| ||||||||||||||||||||
seq2  CAGA--TTGCTTGATTTTCTCCCCTGGGGAAGATTTGTAGTTTCCTTTGC  142

seq1  CCAAAGATTTTTGTTAAGGCTAGC-ACAAGAAAAGCTGGGGT-GGGGGTG  194
      |||||| ||||||||||||||||| ||||||||||||||||| |||||||
seq2  CCAAAGTTTTTTGTTAAGGCTAGCAACAAGAAAAGCTGGGGTGGGGGGTG  192

seq1  GGGGTATTTCTCAGTGGTACAGCACTTCCATGGCACGTGTAAGGCCCTAG  244
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGGTATTTCTCAGTGGTACAGCACTTCCATGGCACGTGTAAGGCCGTAG  242

seq1  GTTCAACCCAAGTAAAACAGGAGGTAAATGAATGTGGCAATATCCACTAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACCCAAGTAAAACAGGAGGTAAATGAATGTGGCAATATCCACTAG  292

seq1  GTTTTTAGATTGTTTAAAACTAAGATGAGTTACCATTCTGAATTTGTGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGATTGTTTAAAACTAAGATGAGTTACCATTCTGAATTTGTGCA  342

seq1  AAAAAAATGCATAAAGCATGTTTCTCATTTTGTTTTTATGTGTTTAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGCATAAAGCATGTTTCTCATTTTGTTTTTATGTGTTTAAAAA  392

seq1  TATAATAACTTTTCCTGAACTGAAAAAAAAGTCGCATCAGTAACTGGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAACTTTTCCTGAACTGAAAAAAAAGTCGCATCAGTAACTGGAAG  442

seq1  CGCTCAGTTATTCTCAAGACTGTACTAACACATTTCCCTTATTTTCTTGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGTTATTCTCAAGACTGTACTAACACATTTCCCTTATTTTCTTGC  492

seq1  AATTTTCAATCATCACTATGCAGTACAACTGAGAAGAATTGTTTCTAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAATCATCACTATGCAGTACAACTGAGAAGAATTGTTTCTAGGA  542

seq1  ATTAGGAAGTGGCTCCTTCCTTTGATTTCTGTTATAAAACTGAAAATTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAGTGGCTCCTTCCTTTGATTTCTGTTATAAAACTGAAAATTTT  592

seq1  GGCTAATATGCCAGTAGTTATTTTCTCAGTCTATGTATTGGGAAAATAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATATGCCAGTAGTTATTTTCTCAGTCTATGTATTGGGAAAATAAA  642

seq1  AACATGAAACTAGAAGCGCTATTTGAAAAATTAAAGGCTCAAGATCACCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAACTAGAAGCGCTATTTGAAAAATTAAAGGCTCAAGATCACCT  692

seq1  CAGTGACCACAGAAGCTGAGCCTATTGTATGGAGCCACTCCCTTGGTGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCACAGAAGCTGAGCCTATTGTATGGAGCCACTCCCTTGGTGGC  742

seq1  TGTGAGCTGGACTCATCCCTAGTGAAAGAGTTCACTCCTTACCTGCACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGGACTCATCCCTAGTGAAAGAGTTCACTCCTTACCTGCACAG  792

seq1  AGTCCCATTCTGATGTGGCCACGCATTCTTTCCAAGGTTCCACACTCATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATTCTGATGTGGCCACGCATTCTTTCCAAGGTTCCACACTCATG  842

seq1  TCCTCTATGGCCTCTCTGTGACTACACACTGCCTGAGAGTTTCCACTCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATGGCCTCTCTGTGACTACACACTGCCTGAGAGTTTCCACTCTC  892

seq1  TCCTCCTCCATGACACAGAACCCATGAACTTCTATTCCCCCCACCCCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCATGACACAGAACCCATGAACTTCTATTCCCCCCACCCCAAG  942

seq1  TCCCAAGAGACAAATAAGGGGAACTCCCCTCTCCCTGAAGCCCTAGGCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAGACAAATAAGGGGAACTCCCCTCTCCCTGAAGCCCTAGGCAG  992

seq1  TTGCTAAGCACTGATAGAGCCAAACTGGAATATAGTGATAATTTAAATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGCACTGATAGAGCCAAACTGGAATATAGTGATAATTTAAATAA  1042

seq1  TCAACCAAGCAAGGTTATAAAAATGCACTGCTATTTTAGATGGCTAATTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAGCAAGGTTATAAAAATGCACTGCTATTTTAGATGGCTAATTT  1092

seq1  GAGCTGTTATCTTTTTTATATACTTCCATTTGATCAATGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTATCTTTTTTATATACTTCCATTTGATCAATGGAATTC  1137