BAC Information

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BAC

Clone NameB6Ng01-004O23
Chromosome12 (Build37)
Map Location 79,694,408 - 79,695,565
singlet/doubletsinglet
Overlap geneGphn
Upstream geneLOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O23.bB6Ng01-004O23.g
ACCDH842211DH842212
length1,0901,142
definitionDH842211|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O23, 5' end.DH842212|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttggatgttttgagttaggatccttttgcattttatattttct
ttgactgttgtgtcgatgttctctatggaatcttctgcacctgagattat
ctcttccatttcttgtattctgttgctgatgctcgaatctatggttccag
atctctttcctagggtttctatctccagcgttgcctcgctttgagttttc
tttattgtgtctacttccctttttagttctagtatggttttgttcatttc
catcacctgtttggatgtgttttcctgtttttctttaaggactcctacct
gtttggttgtgttttcctgattttctttaagggcctgtaactctttagca
gtgctctcctgtaattctttaagtgacttatgaaagtccttcttgatgtc
ctctatcatcatcatgagaaatgtttttaaatctgggtctagattttcgg
ttgtgttggggtgcccaggaccaggtggggtgggagtgctgcgttctgat
gatggtgagtggtcttgacttctgttagtaggattcttacttttgccttt
cgccatctggtaatctctgaagctagctgttatagttgtctctgttaata
gcttgttcttcaggtgactctgttagcttctataagcagacctgggaggg
tagcactctccttagtttcagtgggcagagtattctctgcaggcaagctc
tcttcttgcagggaaggtacccaaatatctggtgttcgaaccggactcct
ggcaggagttgtgttccactcactagaggtcttaggatcccgtgaggaat
cctatgtgggcccttgcgggtgccgtgcgactccgctggcaaggtacccg
ggggctcgagtggagcggaaggggcttgtgccccaggtcaggcccgggta
gtctgcttccctattaccgcagtctcagttccgtgcgattggatggggca
gacgctgtgtccactcaccagaggtcttaggatcccgttgggaatcctgt
gttgggcccttgcaaggtggtcggcgactcagctgcaagaagctctggtg
ctcgagatgggatgggaaggtttaatagttttaatgacta
gaattcaatgtagggagttttaaaaacacaatttccatttgaacagatta
ttctcatgaaactggaatagaggtggtataaaactgcaaggaacttctaa
tccaaaaagttaataatgacccaaataaaaaacagtggcagtgtggatga
agatcaggaatgcattcaagaggttgtagaagaaaaaatattgatgtaaa
ggtagaaaattttagttcagtatctgtaatgaaaacttattagaaggaaa
tatgtaatggatatagtgttagaatttgtagtttaattaaggtccaggca
gtgataagataacaaaaatcacttactgatggcacttgaactactaacct
acataaagccacaccaaataaacatacaaacaatgaaaaagggaccaata
atgcttataaatcaattgacaaaagacaaggttacaaaagaggcatctaa
gaagagtaacccttccgagctcactctgtctgccctagataatgggcagt
tctatttttagtcatctttctttacatatgacattacttagcaccagtct
taatagaacggaactaaacctttatatatgttctaaacatctaacaaaaa
tgtctaggtctaattatatgctcttgggtattaaaagtggctgtgttaga
tccagctcaaaggctgaatattaacttggttattattttatctgacaaaa
gctaaccattcatgcagagtttattaattgtgattgatctgctctgatga
agaggagagaaggcagttctctcctggtagaaaatatagttatttttata
cttttttccttgaaatttctgtgtcaatgtgacttggaacacagaatttg
atttctctaagaaaccaatgttaaggggaaagggcattgaaattatagaa
gctcctgcagtttcatatcaccttcacaccaattctctattccacttcag
gactggttagttaattgttgctatgaatgtattaaaattttaataatcta
cagttacatttgtattttcgaataaattttggtttgcatataataaataa
ctgatggtctgtaatttaacagtatacttcataataccgacttctgaaga
attctgaattttcttattctagttgctctaacatatttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79694408_79695565
seq2: B6Ng01-004O23.g_68_1209 (reverse)

seq1  AATGAAATAAAAGTTAGGAAGCACACTAGAATAAGGAAAATGTCAGAAAT  50
      ||||||||  | |||||  |||| |||||||||| |||||| |||| |||
seq2  AATGAAAT--ATGTTAG--AGCA-ACTAGAATAA-GAAAAT-TCAG-AAT  42

seq1  TCTTTCAGAAGTCGGTATTAATGAAAGTATTTACTGTTAAA-TACAGACC  99
      || |||||||||||||||| ||| |||||  |||||||||| ||||||||
seq2  TC-TTCAGAAGTCGGTATT-ATG-AAGTA--TACTGTTAAATTACAGACC  87

seq1  ATTCAGTTATTTATTAATAATGCAAACCAAAATTTATTTGGAAAATACAA  149
      | ||||||||||||||   ||||||||||||||||| || ||||||||||
seq2  A-TCAGTTATTTATTA--TATGCAAACCAAAATTTA-TTCGAAAATACAA  133

seq1  ATGTAACTGTAGATTATTAAAATTTTAATACATTCATAGCAACAATTAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTGTAGATTATTAAAATTTTAATACATTCATAGCAACAATTAAC  183

seq1  TAACCAGTCCTGAAAGTGGAATAGAGAATTGGTGTGAAGGTGATATGAAA  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTCCTG-AAGTGGAATAGAGAATTGGTGTGAAGGTGATATGAAA  232

seq1  CTGCAGGAGCTTCTATAATTTCAATGCCCTTTCCCCTTAACATTGGTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAGCTTCTATAATTTCAATGCCCTTTCCCCTTAACATTGGTTTC  282

seq1  TTAGAGAAATCAAATTCTGTGTTCCAAGTCACATTGACACAGAAATTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAATCAAATTCTGTGTTCCAAGTCACATTGACACAGAAATTTCA  332

seq1  AGG-AAAAAGTATAAAAATAACTATATTTTCTACCAGGAGAGAACTGCCT  398
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAGTATAAAAATAACTATATTTTCTACCAGGAGAGAACTGCCT  382

seq1  TCTCTCCTCTTCATCAGAGCAGATCAATCACAATTAATAAACTCTGCATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCTTCATCAGAGCAGATCAATCACAATTAATAAACTCTGCATG  432

seq1  AATGGTTAGCTTTTGTCAGATAAAATAATAACCAAGTTAATATTCAGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAGCTTTTGTCAGATAAAATAATAACCAAGTTAATATTCAGCCT  482

seq1  TTGAGCTGGATCTAACACAGCCACTTTTAATACCCAAGAGCATATAATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGGATCTAACACAGCCACTTTTAATACCCAAGAGCATATAATTA  532

seq1  GACCTAGACATTTTTGTTAGATGTTTAGAACATATATAAAGGTTTAGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGACATTTTTGTTAGATGTTTAGAACATATATAAAGGTTTAGTTC  582

seq1  CGTTCTATTAAGACTGGTGCTAAGTAATGTCATATGTAAAGAAAGATGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTATTAAGACTGGTGCTAAGTAATGTCATATGTAAAGAAAGATGAC  632

seq1  TAAAAATAGAACTGCCCATTATCTAGGGCAGACAGAGTGAGCTCGGAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGAACTGCCCATTATCTAGGGCAGACAGAGTGAGCTCGGAAGG  682

seq1  GTTACTCTTCTTAGATGCCTCTTTTGTAACCTTGTCTTTTGTCAATTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCTTCTTAGATGCCTCTTTTGTAACCTTGTCTTTTGTCAATTGAT  732

seq1  TTATAAGCATTATTGGTCCCTTTTTCATTGTTTGTATGTTTATTTGGTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGCATTATTGGTCCCTTTTTCATTGTTTGTATGTTTATTTGGTGT  782

seq1  GGCTTTATGTAGGTTAGTAGTTCAAGTGCCATCAGTAAGTGATTTTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATGTAGGTTAGTAGTTCAAGTGCCATCAGTAAGTGATTTTTGTT  832

seq1  ATCTTATCACTGCCTGGACCTTAATTAAACTACAAATTCTAACACTATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCACTGCCTGGACCTTAATTAAACTACAAATTCTAACACTATAT  882

seq1  CCATTACATATTTCCTTCTAATAAGTTTTCATTACAGATACTGAACTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACATATTTCCTTCTAATAAGTTTTCATTACAGATACTGAACTAAA  932

seq1  ATTTTCTACCTTTACATCAATATTTTTTCTTCTACAACCTCTTGAATGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTACCTTTACATCAATATTTTTTCTTCTACAACCTCTTGAATGCA  982

seq1  TTCCTGATCTTCATCCACACTGCCACTGTTTTTTATTTGGGTCATTATTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATCTTCATCCACACTGCCACTGTTTTTTATTTGGGTCATTATTA  1032

seq1  ACTTTTTGGATTAGAAGTTCCTTGCAGTTTTATACCACCTCTATTCCAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGGATTAGAAGTTCCTTGCAGTTTTATACCACCTCTATTCCAGT  1082

seq1  TTCATGAGAATAATCTGTTCAAATGGAAATTGTGTTTTTAAAACTCCCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGAATAATCTGTTCAAATGGAAATTGTGTTTTTAAAACTCCCTA  1132

seq1  CATTGAATTC  1158
      ||||||||||
seq2  CATTGAATTC  1142